Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0650 ATGGATAGAGGTGGGAGAGGTGGAACTTGTAATAGTCCATGCTCCTTCACCTCACTGTTCCTTTCATACTCCATATCTACTCCATTGACCCCACACATTTATTTCAAAATGAATCCTATGCTACACAATCGGAAAGATAGAGCACAAGGATTCCGGTTGCTAATAGAAGGTGGTGGGGTGCTGTTCTCGGCCGTCGGTGTTGGGGGTTCGCGACCAACGAAGCTATGGGTGGAAGGAAGATTGACATGCTGTGCAAACATGTCATTGAAAAGCATAGTTCGCGAACTCAAAGAAATGAGAGTTGCAATAAGCAGCATATCAAAGCAGGGTTTAGAGGGAAAGCTATGGCACAGTCGGAAAACAAAATCACATATTGCTCCTGATGTCCCTCTACCTCCTTTTGATCCTAGTCAACAAGGGCAGTGGGCAAATCTACCTCCAGAGCTGCTTTTGGACATTATCCGCAGGCTGGAAGAGAGTGAGACATCTTGGCCTACACGAGCTACTATTGTGTTTTGTGCTTCAGTATGTAAATCATGGAGAGCCATTACAAAGGAGATTGTCAAGACTCCTGAGCAATGTGGGAGGTTCACATTTCCCATCTCATTGAAGCAGCCCGGTCCCCGTGATGCACCGATACAGTGTTTTATCAGGAGGAATAGAGAAACTTCTACATATTTTTTGTACTTTGCTCTTGTTCCATCAGAGAATGAGAGTCCTAAGCTGTTATTAGCTGCCAAAAAGATAAGAAGAGCTACAAGCACAGAGTTTTCTATATCTTTTATTGCGAATGATTTTTCTCGGGCCAGCAACACATACCTTGGTAAATTGAGGTCCAATTTTATGGGCACCAAGTTCACCCTATACGACAGCCAACCTCCACACATTACAAGTGTTCAACCCACTAATCATCCTAGTAGTAAAGTCCACTCTAAGCAGGTGTCTCACAAAGTTTTGTCACGTTACTATAATGTTGCTACCATTAGCTATGAACTTAATGTTCTCCGCACGAGAGGTCCAAGAAGAATGCACTGCATTTTGACCTCCATACCTGTCTCGGCTATTGAGGAAGGAGGCAATGCTCCAACTCCAACTATATTTCCACATTTTTCTTCATCTCCGGCACTGAAAGGAAAAGATCCAATTTTAGACTTGAATTCTGCAAGCCTCCCAGATCCGCCGGCATTGTGTCAGGGCTCAGTGGAGCCTCTGGTTCTTAAAAACAAGGCTCCCAGATGGCATGAGCAATTGCAGTGTTGGTGCCTAAACTTTAAAGGTCGTGTCACGGTGGCTTCAGTTAAGAATTTCCAGCTCTGTGCTGCAGTCGATCCATCTCATAATGTTTCTGCCGCAGAACAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTCACCATGGACTACCGTTATCCTCTCTCTGCTTTTCAAGCCTTTGCCATTTGCTTGAGCAGCTTCGATACTAAACCAGCCTGTGAATGA 1491 0.4427 MDRGGRGGTCNSPCSFTSLFLSYSISTPLTPHIYFKMNPMLHNRKDRAQGFRLLIEGGGVLFSAVGVGGSRPTKLWVEGRLTCCANMSLKSIVRELKEMRVAISSISKQGLEGKLWHSRKTKSHIAPDVPLPPFDPSQQGQWANLPPELLLDIIRRLEESETSWPTRATIVFCASVCKSWRAITKEIVKTPEQCGRFTFPISLKQPGPRDAPIQCFIRRNRETSTYFLYFALVPSENESPKLLLAAKKIRRATSTEFSISFIANDFSRASNTYLGKLRSNFMGTKFTLYDSQPPHITSVQPTNHPSSKVHSKQVSHKVLSRYYNVATISYELNVLRTRGPRRMHCILTSIPVSAIEEGGNAPTPTIFPHFSSSPALKGKDPILDLNSASLPDPPALCQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLCAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0650 496 SUPERFAMILY F-box domain 136 185 IPR036047 GO:0005515
Dere13g0650 496 Gene3D Tubby Protein; Chain A 200 496 IPR025659 -
Dere13g0650 496 SUPERFAMILY Tubby C-terminal domain-like 191 496 IPR025659 -
Dere13g0650 496 ProSitePatterns Tub family signature 1. 424 437 IPR018066 -
Dere13g0650 496 Pfam F-box domain 142 189 IPR001810 GO:0005515
Dere13g0650 496 Pfam Tub family 203 491 IPR000007 -
Dere13g0650 496 ProSitePatterns Tub family signature 2. 481 496 IPR018066 -
Dere13g0650 496 PRINTS Tubby superfamily signature 406 423 IPR000007 -
Dere13g0650 496 PRINTS Tubby superfamily signature 257 273 IPR000007 -
Dere13g0650 496 PRINTS Tubby superfamily signature 453 472 IPR000007 -
Dere13g0650 496 PRINTS Tubby superfamily signature 273 297 IPR000007 -
Dere13g0650 496 PRINTS Tubby superfamily signature 474 496 IPR000007 -
Dere13g0650 496 PRINTS Tubby superfamily signature 322 349 IPR000007 -
Dere13g0650 496 PRINTS Tubby superfamily signature 424 440 IPR000007 -
Dere13g0650 496 CDD F-box_AtTLP-like 142 186 - -
Dere13g0650 496 Gene3D - 136 189 - -
Dere13g0650 496 PANTHER TUBBY-RELATED 105 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0650 Dere-ChrDere13 8081219 8085076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0650 87 496 TUB Transcription Factor Family AT2G18280 61.594 1.46e-174 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere13g0650 Tub 4.7e-103 CL0395