Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0647 ATGGGAACCGATGGTGTTGAAGTAGTGGAGACATTACCAAATTCCCGCTCTTTTAAGGTACATAGGAAAATGTGCACAGAACTAATGAAATTAGTTGATAGAATCACAAAAATATTTCCAGATATAGAGGAAGTGCGGCCTGGATGCTCATCAGGAATACAGTCTCTGTGCTTGCTAAACAGTGCAATTGAAAAAGCCAAACTTCTTCTGCAGTATTGCTGTGACTCTAGTAAACTCTACCTGGCTGTGACCGGAGATGTAGTGCTCTCAAGATGCCAAAAAGTGAGAAAATCATTGGTGCAAAGCTTAGGCCAAATTCAGAGTATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCAAATAATTGACAATCTTGCATGTGCGACATTTGCCCTGGATTCAGATGAAGAAGAGGCTGGGAGGGTTGTGAGAGAATTGCTCCAGCAAGATCCTTCAACCTCTGATTCAATGGATTATTCTGAAATTAAAGTTCTTCAGTTTGCTGCAGCAAGACTTAATATCACATCCCCAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGCTGCTAGATAACGTCCAACCAAAAGAGCAGACAAAAAAGAGTATCTTAAAATATCTCTTGTATTTATTAAAAAAGCATGAAAAATATATTGTGGGAGAACAAATGGAAAAGGTCTATGCTTATAGTGCAGGATCCATTGTGACTCAGAATTCCAGTTATGATTCTCTACATGTCCATTGTGTTGAACCAGATCAATGCTTGAATTATGATCAGTATAGACCTCACAATAGTGAGTTGGATAGAGCACTGCCACCTGAGCAATATAAGTGCCCAATATCTTTAAGATTAATGCATGATCCTGTTGTTATTGCTTCTGGAGTAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGCAATGATGTATGTCCAAAAACTGGGAAGAAACTGGTGCATATGTCATTGACTCCAAACGTTGTCATGAAGGACTTAATATCTAAGTGGTGCAAAGATAACAGAGTTACCCTTCCTGATCCAGTTCAGCAAGCAGAAGATTTTAACTCATGGGACGTTTCCTCCATTTCCATCAGGAGCTTTGGCAGTTCTATGAATGATTTGCACCTGCCGGTTGATCTTAGTAGCATGTCACTTGGATCATTAGATAATAGTCATGGTTCTGATTCCTTAAATGCTAGGAGCACCCATGGTTTGAATCTGATGTTGATGAAGGCCAATGACAATTCTCAGAGTCATCAACCTAATATGCATGTACATGACACAGATCCGATAAATTTGTCTAAACTCTCTGACCTTGAGTGGGATTCTCAATACCAGGTCATTGAAGAACTGAAAAACCATTTGAAATGCAATTGCCAAGCTTCTTTTTCTGTGTCTTCTGAGAATTTCATTGTACCACTCAACAAATTTTTGAGCATTGCATATGAACTTCGTGACATAAAAGCTGTAAGAGCTGGAACTCAGTTGTTAATGGATTTTGTGAACAACTGCAGAAAGGATCTAACTTGTGTGAGTGAAAATACATTCAGCATGTTGGCAAGTTTTCTTGATTTAGAAGTGATGGGTGAAGCTCTTTCTATAATGGAAAAACTTTCAGGGTGCCAGGATAATATAGCTACGACTGCAACATCCAGTGCACTCACTTCCATCTTAAAGATTCTTGACTCTGAGAGCGGAGAGTTCCAACAACAAGCTATCAGAATAATGTATAATTTGTCCTTCATTGGTGAAAATCGCTCTCGCATGGTATCTCTCGGGTGCATCCCGAAATTGCTGCCATTTATTGAAGACAGGGCCCTGTTAAGATACTGCGTATGTATACTGGAAAACCTTTGTGATACTGAAGTGGGCAGGGTTTCTGTTGCTGAAAATAGAGGATGCATATCTTTAGTTGCTGAGATACTTGAGACTGGCAGCGATGAGGAACAAGAGCATGCACTGGCTGTTTTGCTTTCTTTATGCTCTCAACGTGAGGATTATTGTGAGTTGGTCATGTATGAGGGTGTTATACCTTCTCTTGTCCATGTCTCCGTAAATGGAAGCGTCAATGGAAAGGGCAGAGCATTGGAATTGCTCCGTCTCTTGAGGGATGTTAAATGTGATAGGAATGAAGAATGCGTCCCACCAAATCACAACAATTCTTGTGATTCTAACAATCATTCTCGAGAGAAGAAATCATCCAAGACATCTGGATTTCTGAAGAAACTATCACTCTTCCCGAAATCCAGTTCGCATGCATCAAAAATCAAGAGATGA 2286 0.3981 MGTDGVEVVETLPNSRSFKVHRKMCTELMKLVDRITKIFPDIEEVRPGCSSGIQSLCLLNSAIEKAKLLLQYCCDSSKLYLAVTGDVVLSRCQKVRKSLVQSLGQIQSMVPVMLAAEISQIIDNLACATFALDSDEEEAGRVVRELLQQDPSTSDSMDYSEIKVLQFAAARLNITSPKAILIEKRSIKKLLDNVQPKEQTKKSILKYLLYLLKKHEKYIVGEQMEKVYAYSAGSIVTQNSSYDSLHVHCVEPDQCLNYDQYRPHNSELDRALPPEQYKCPISLRLMHDPVVIASGVTYERMWIQKWFDEGNDVCPKTGKKLVHMSLTPNVVMKDLISKWCKDNRVTLPDPVQQAEDFNSWDVSSISIRSFGSSMNDLHLPVDLSSMSLGSLDNSHGSDSLNARSTHGLNLMLMKANDNSQSHQPNMHVHDTDPINLSKLSDLEWDSQYQVIEELKNHLKCNCQASFSVSSENFIVPLNKFLSIAYELRDIKAVRAGTQLLMDFVNNCRKDLTCVSENTFSMLASFLDLEVMGEALSIMEKLSGCQDNIATTATSSALTSILKILDSESGEFQQQAIRIMYNLSFIGENRSRMVSLGCIPKLLPFIEDRALLRYCVCILENLCDTEVGRVSVAENRGCISLVAEILETGSDEEQEHALAVLLSLCSQREDYCELVMYEGVIPSLVHVSVNGSVNGKGRALELLRLLRDVKCDRNEECVPPNHNNSCDSNNHSREKKSSKTSGFLKKLSLFPKSSSHASKIKR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0647 761 PANTHER U BOX DOMAIN-CONTAINING 23 711 - -
Dere13g0647 761 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Dere13g0647 761 CDD RING-Ubox_PUB 274 326 IPR045210 -
Dere13g0647 761 Pfam Kinesin-associated protein (KAP) 491 659 - -
Dere13g0647 761 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Dere13g0647 761 SUPERFAMILY RING/U-box 265 350 - -
Dere13g0647 761 SUPERFAMILY ARM repeat 520 712 IPR016024 -
Dere13g0647 761 Gene3D - 445 718 IPR011989 -
Dere13g0647 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 347 IPR013083 -
Dere13g0647 761 Pfam U-box domain 274 344 IPR003613 GO:0004842|GO:0016567
Dere13g0647 761 MobiDBLite consensus disorder prediction 721 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0647 Dere-ChrDere13 8072387 8076030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0647 6 715 U-box Gene Family AT4G36550 37.917 3.33e-140 428