Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0641 ATGGAACTCACTGGCGAAGATAAGGACATAGAGATGCCAACCACTCACAATTGTAATTCCCCCAGTAGAGATTCTTCCGATCACCATCATCTCTATTTTCCTCCTCCATTGAATCAACTTCGACTATCGCCGAGACCGCGAAGAGATCCAGATCCAAGCTCAACAATTGTTATGTACAGAGAATGTTTGAAGAATCACGCAGCGAGCATGGGGAGTCATGTGGTGGATGGATGTGGTGAGTTCATGCCAAGCGGTGAAGAAGGCACCATGGAATCTTTAAGATGTGCTGCTTGTGGGTGTCACCGGAGTTTTCATCGGAAAGAGACCGTAGGTGAGCCAAAAGAACAACATGTTTCCAATTACTACAGCTATTATCCCAACAAAAACAATGGTCAACAACATAGGATTCCTTCTCCTACAGTCCCTTCTCTTCATCTACATCATCGATTTATTCAACCAATGATGGCCTTTGGAGGAGGAGTAGGAGTCCCGGTGGAGTCCTCCGGCGAAGATCTCAAAGTGTTCCGGTCTAATACCGGAGGGCAGCCACCGGTGCAGGCATCGCTATCCAAGAAGAGGTTTCGGACCAAGTTTACACAAGAACAAAAGAATAGAATGATGGAATATGCAGAGAAGCTGGGGTGGAAGATCCAGAAACATGATGAACAAGAAGTACGACAATTCTGTTCTCAGGTGGGTGTCAAAAGGCAGGTTTTCAAGGTTTGGATGCATAACAATAAGCAAGCCAGGACGCAGCAGCAGCAGCAGCAGCAGCAAGTGTAA 783 0.4649 MELTGEDKDIEMPTTHNCNSPSRDSSDHHHLYFPPPLNQLRLSPRPRRDPDPSSTIVMYRECLKNHAASMGSHVVDGCGEFMPSGEEGTMESLRCAACGCHRSFHRKETVGEPKEQHVSNYYSYYPNKNNGQQHRIPSPTVPSLHLHHRFIQPMMAFGGGVGVPVESSGEDLKVFRSNTGGQPPVQASLSKKRFRTKFTQEQKNRMMEYAEKLGWKIQKHDEQEVRQFCSQVGVKRQVFKVWMHNNKQARTQQQQQQQQV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0641 260 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Dere13g0641 260 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 108 IPR006456 -
Dere13g0641 260 MobiDBLite consensus disorder prediction 1 54 - -
Dere13g0641 260 NCBIfam homeobox domain, ZF-HD class 191 248 IPR006455 -
Dere13g0641 260 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 248 - -
Dere13g0641 260 Gene3D - 177 254 - -
Dere13g0641 260 SUPERFAMILY Homeodomain-like 180 249 IPR009057 -
Dere13g0641 260 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Dere13g0641 260 FunFam Zinc-finger homeodomain protein 2 179 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0641 Dere-ChrDere13 8038240 8039022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0641 38 249 ZF-HD Transcription Factor Family AT2G18350 52.294 6.81e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere13g0641 ZF-HD_dimer 1.3e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0919 09 12132606 12135000 Dere13g0641 13 8038240 8039022 CCT
Dere13g0641 13 8038240 8039022 Dere13g0641 13 8038240 8039022 ECH
Dere13g0641 13 8038240 8039022 Dere09g0919 09 12132606 12135000 ECH