Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0638 ATGTTGTGGTTGGGCAGAGACAGGGACAGAGGCAGAGGTTTTGATGAATTGGGTTTGAGAGTTTATGAAAAGCCTCGCGATCGGAGAAGGCAGATCCCTGGAATACTGTTCCCACTTAGTCACGTGGCCTCTTTTGACTACCCCAGGAGCTTTGAATCTCGAGGGAGGGGGTATTGGTTGAAACAGAGAGTCATACAGAAGAAGAAACGAATGATGTCTGGTTGCAGCAGCTACGAGGGGCACGTGATGGGAGCGTGCACATGTGGCATGTATCACAGCCAAACCAATTCCTTCCCTGCGGTATTCACCAACCAAAATCCCTATGGCTACGACTACGAGGAATCCGACATGTACTCTTCCTTCACACCCTCTTCATCTTCCGTCGACTGCACGCTCTCCCTCGGAACCCCGTCCACTCGTTTAACCCAAGACGAAGACAAGCGTAGCAGTAGCCGCAACGAACGACGTCGCTCCGTCTCCAACATGTGCTGGGATTTATTACAATCCAATCAATCCCACAGTAACAAGTCCAGTCGAGGCTCCCACAGTAGCTCCTCCTCCAATGATCCCCTTCTCGCTCGTCGTTGTGCCAATTGCGACACCACTTCCACACCGCTCTGGAGAAATGGCCCTCGAGGCCCAAAGTCACTATGCAATGCCTGTGGGATCAGATTCAAGAAGGAAGAGAGGAGAGCCAGCGCCGCAGCGGCCGCAGCCACGGCTTCGGCACCGAGTGGCGTTATGGAGTCGCCGGCGATGTACAGCCACCACGATAATTACTGGTACGCGCAGTACTCGCAGGAGCAGAGAATGCCGTGCCTTTCGGTGGACGACGGCAACGGAGACTCCGAGAACGGCATGCCGTACCTCGCCTGGAGATTCAACGTAACAGACAGACCAAGCCTCGTCCACGACTTTACAAGATGA 927 0.5405 MLWLGRDRDRGRGFDELGLRVYEKPRDRRRQIPGILFPLSHVASFDYPRSFESRGRGYWLKQRVIQKKKRMMSGCSSYEGHVMGACTCGMYHSQTNSFPAVFTNQNPYGYDYEESDMYSSFTPSSSSVDCTLSLGTPSTRLTQDEDKRSSSRNERRRSVSNMCWDLLQSNQSHSNKSSRGSHSSSSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAAATASAPSGVMESPAMYSHHDNYWYAQYSQEQRMPCLSVDDGNGDSENGMPYLAWRFNVTDRPSLVHDFTR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0638 308 PANTHER GATA TRANSCRIPTION FACTOR 18 81 308 IPR044272 GO:0003700|GO:0009908
Dere13g0638 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 231 - -
Dere13g0638 308 ProSitePatterns GATA-type zinc finger domain. 196 221 IPR000679 GO:0006355|GO:0043565
Dere13g0638 308 MobiDBLite consensus disorder prediction 170 189 - -
Dere13g0638 308 MobiDBLite consensus disorder prediction 123 140 - -
Dere13g0638 308 MobiDBLite consensus disorder prediction 141 158 - -
Dere13g0638 308 Pfam GATA zinc finger 196 230 IPR000679 GO:0006355|GO:0043565
Dere13g0638 308 CDD ZnF_GATA 195 227 IPR000679 GO:0006355|GO:0043565
Dere13g0638 308 MobiDBLite consensus disorder prediction 123 158 - -
Dere13g0638 308 Gene3D - 192 253 IPR013088 GO:0006355|GO:0008270
Dere13g0638 308 ProSiteProfiles GATA-type zinc finger domain profile. 190 226 IPR000679 GO:0006355|GO:0043565
Dere13g0638 308 SMART GATA_3 190 245 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0638 Dere-ChrDere13 8000981 8002678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0638 75 308 C2C2-Gata Transcription Factor Family AT3G50870 40.000 7.22e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere13g0638 GATA 8.2e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0911 09 12020316 12021264 Dere13g0638 13 8000981 8002678 CCT
Dere13g0638 13 8000981 8002678 Dere13g0638 13 8000981 8002678 ECH