Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0628 ATGTCTTCGTCGTCCCCTGCTCCATCTTCTGATTCTGATAATAACAGCAATAATAATAATAGTACTAATAATAACAATAATAATAATAATAATAATAAGAATAATAATAATAATAATAGTTCTTCACCATCAAGCCCCCCACCACCCGACTCATCTTCGAATTCCAATTCTACTTCAAATTCAAATTCAAATTCAAATTCATCATCAAGCAGTCCAACTCCATCACCCCCATCACCTGCTCAAAACTCTTCGAATTCGAATTCTTCTGACAGTAAATCGTCACCTCCAACTTCATCACCTTCACAGAACAATGGAAGCCGGGGATCATCTACACCGTCGAATTCTGATTCACCCTCCTCTGGGTCGTCACCGTCAACCCCTAATTTAACACCAAAATCTTCAGGCAACAAACCATCATCGACACCTACACTGTCTGATTCCGGCGGCAAAAAAAGCAGCGGCGGCGACAAGGATGACGACGGTAGAGCAGTTGTAGGGGGAGCGCTTGGGGTTGGATGTGTTCTTCTCATTATGATCGTCGTCTGTATCATTTGCCGCAGAAAGAAGAAGAGAAAGCAAATGTACTATTACAGCGATGATGGGAAAGGTGGCAAATCTGGAAATGGTTATTACAACAATCGGCCAGGGCAAAACCATAATAACTGGCACGGTGGGAATGACCATGTTGTGAGGATGCAGCAATCACCAAATGGAATGGGTATGGGTATGGGTCCTAACAGTGACAGTAGTGGGTGGGGTCCTGTACCTCCACCTCCTCCTCCACACAGTACTGATATGAGCTCCAATTACTCCTTGGGACCACCCCCTCTTCCTCCTCCTTCCCCAGGCCTTGCTTTAGGGCTCAAGGGTGGTACCTTTTCCTATGAAGACTTGGCTGCTGCTACAGAGAATTTTGCAGATAAGAATTTGTTAGGACAAGGTGGCTTTGGGTATGTCCATAAGGGAGTTTTGCCGAATGGAAAGGAAATTGCTGTGAAGAGCTTGAAAGCAGGTAGTGGGCAAGGAGAGCGAGAGTTCCAAGCTGAGATTGATATCATTAGTCGTGTTCATCATCGCCATCTTGTGTCGCTCAATGGCTACTGTATTGCTGGTGGACAGAGAATGTTGGTTTATGAATTTGTCTCCAACAAGACTCTGGAGCATCACCTTCATGCAAAGGGTTTGCCTACCATGACCTGGCCTGATAGAATGCGAATTGCAGTAGGATCTGCCAAAGGGCTTGCATACCTTCATGAAGATTGTCATCCTCGAATCATCCACCGTGACATCAAATCTGCTAATGTCCTCCTTGATGATAGCTACGAAGCTAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTCTCAACTCGAGTCATGGGAACATTCGGGTACTTGGCTCCCGAATATGCATCAAGTGGAAAATTGACTGAGAAGTCTGATGTGTTCTCTTTTGGAGTGATGTTATTAGAAATTATTACAGGAAAGCGACCCGTGGATGTCCTAAATGTCATGGATGATAGTTTAGTGGACTGGGCTCGACCACTTCTCACGAAAGGGCTGGAAAATGGCCACTTTGAAGAGCTGGTGGATCCATTTTTGGAAGGCAATTACAATAACCAGGAATTGGCTCGCATGGCTGCCTGTGCTTCTGCCAGCATTCGTCATTCTGCCAAGAAACGTCCTAAAATGAGCCAGATCGTGAGAGCATTGGAAGGAGATGTGTCACTGGACGACTTAAATGACGGACAAAGGCCTGGGCACAGCAACCTTCTGGCTTCTTCATCAAGCTCAGAATATGATTCAGGAGCATACCAAGCTGATATGAAGAGGTTCAGACAGTTAGCTCTGTCGAGCCAAGAATTTGGAAGCAGCGAGGGATCTAGTGGTGAAATGCAGCATCGGCAGATTCCAAGGCAACACTTTTAG 1947 0.4515 MSSSSPAPSSDSDNNSNNNNSTNNNNNNNNNNKNNNNNNSSSPSSPPPPDSSSNSNSTSNSNSNSNSSSSSPTPSPPSPAQNSSNSNSSDSKSSPPTSSPSQNNGSRGSSTPSNSDSPSSGSSPSTPNLTPKSSGNKPSSTPTLSDSGGKKSSGGDKDDDGRAVVGGALGVGCVLLIMIVVCIICRRKKKRKQMYYYSDDGKGGKSGNGYYNNRPGQNHNNWHGGNDHVVRMQQSPNGMGMGMGPNSDSSGWGPVPPPPPPHSTDMSSNYSLGPPPLPPPSPGLALGLKGGTFSYEDLAAATENFADKNLLGQGGFGYVHKGVLPNGKEIAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLNGYCIAGGQRMLVYEFVSNKTLEHHLHAKGLPTMTWPDRMRIAVGSAKGLAYLHEDCHPRIIHRDIKSANVLLDDSYEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEIITGKRPVDVLNVMDDSLVDWARPLLTKGLENGHFEELVDPFLEGNYNNQELARMAACASASIRHSAKKRPKMSQIVRALEGDVSLDDLNDGQRPGHSNLLASSSSSEYDSGAYQADMKRFRQLALSSQEFGSSEGSSGEMQHRQIPRQHF 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0628 648 ProSiteProfiles Protein kinase domain profile. 305 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0628 648 MobiDBLite consensus disorder prediction 51 71 - -
Dere13g0628 648 MobiDBLite consensus disorder prediction 80 150 - -
Dere13g0628 648 FunFam Proline-rich receptor-like protein kinase PERK1 381 588 - -
Dere13g0628 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Dere13g0628 648 MobiDBLite consensus disorder prediction 199 279 - -
Dere13g0628 648 SUPERFAMILY Protein kinase-like (PK-like) 288 577 IPR011009 -
Dere13g0628 648 Gene3D Phosphorylase Kinase; domain 1 286 380 - -
Dere13g0628 648 MobiDBLite consensus disorder prediction 210 244 - -
Dere13g0628 648 MobiDBLite consensus disorder prediction 1 41 - -
Dere13g0628 648 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 170 624 IPR047117 -
Dere13g0628 648 FunFam proline-rich receptor-like protein kinase PERK1 283 380 - -
Dere13g0628 648 Pfam Protein tyrosine and serine/threonine kinase 309 577 IPR001245 GO:0004672|GO:0006468
Dere13g0628 648 MobiDBLite consensus disorder prediction 1 162 - -
Dere13g0628 648 MobiDBLite consensus disorder prediction 624 648 - -
Dere13g0628 648 Gene3D Transferase(Phosphotransferase) domain 1 381 589 - -
Dere13g0628 648 SMART serkin_6 305 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0628 648 MobiDBLite consensus disorder prediction 584 604 - -
Dere13g0628 648 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Dere13g0628 648 MobiDBLite consensus disorder prediction 624 641 - -
Dere13g0628 648 CDD STKc_IRAK 311 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0628 Dere-ChrDere13 7863192 7866946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0628 117 623 Trihelix Transcription Factor Family AT1G70460 48.438 7.89e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere13g0628 PK_Tyr_Ser-Thr 3.3e-47 CL0016