Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0621 ATGACGACTCGCATAGCGCCGGGTGTGGGAGCAAACTTGCTGGGTCAGCACTCGGCGGAGAGGAATCAAGATGCTACTGCTTATGTCGGCAATCTCGACCCCCAGGTAACTGAGGAGTTATTATGGGAGTTGTTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTTCCAAAAGATAGAGTGACTAACCAACATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAGCTTTATGGAAAACCAATACGTGTAAATAAGGCTTCCCAAGATAAAAAGAGCTTGGATGTGGGAGCAAACCTTTTCATTGGAAACCTTGATCCTGATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTCATTGTTACAAATCCGAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGGTTTGGCTTTATTAGCTATGATTCATTTGAGGCATCTGATTCGGCTATTGAGGCAATGAACGGGCAATACCTTTGCAATCGTCAAATAACAGTGTCTTATGCATATAAGAAAGACACCAAGGGGGAAAGGCATGGTACTCCAGCAGAGAGAGTTTTGGCTGCCAGCAACCCAAGTGCCCAGAAGAGCAGGCCTCACACTTTGTTTGCCAGTGGGCCTCCCACACTATCCAATGTTCCTCAAGCCAACGGTACCATTGCTGCTCCTGTGCCTCCTCGTCCCTTTGCTAATGGCGTTGCTACCCCTGCTATTCCGGCCCTTCGTCCACCACCCCCTCAAGCTGCACCATTTCCGCCTATGCCAGTAGCCGGGCAACCAACATGGCATCAACAGCAGACGGGTCAGACAATTCCTCCTCCTATGATGCCTCCACCTCCTGTCCAGCAGTTCAGGCCACCTCACTCGAGTATGCCACCACCTCCGCCTCCGCAAGCAGTTCCAACTCCCCCAAGGCCTCTTCCACTGCCAACAGCAATGACAGGACAACCACCTGTTTGGCGGCCTCCACCACCCCCTCCACCTCAGCAACAGGGTGGGCGACCCCCTCCATTTCCTCATTCCTCGATGCCACCACCACCTCCGCCTCCTATGAGTTGA 1119 0.5049 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAQKSRPHTLFASGPPTLSNVPQANGTIAAPVPPRPFANGVATPAIPALRPPPPQAAPFPPMPVAGQPTWHQQQTGQTIPPPMMPPPPVQQFRPPHSSMPPPPPPQAVPTPPRPLPLPTAMTGQPPVWRPPPPPPPQQQGGRPPPFPHSSMPPPPPPPMS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0621 372 SMART rrm1_1 26 99 IPR000504 GO:0003723
Dere13g0621 372 SMART rrm1_1 113 187 IPR000504 GO:0003723
Dere13g0621 372 MobiDBLite consensus disorder prediction 194 235 - -
Dere13g0621 372 CDD RRM1_SF3B4 28 100 IPR034158 -
Dere13g0621 372 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 366 - -
Dere13g0621 372 CDD RRM2_SF3B4 111 193 IPR034159 -
Dere13g0621 372 MobiDBLite consensus disorder prediction 291 372 - -
Dere13g0621 372 MobiDBLite consensus disorder prediction 258 277 - -
Dere13g0621 372 Gene3D - 107 204 IPR012677 -
Dere13g0621 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Dere13g0621 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Dere13g0621 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Dere13g0621 372 Gene3D - 16 106 IPR012677 -
Dere13g0621 372 MobiDBLite consensus disorder prediction 254 372 - -
Dere13g0621 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Dere13g0621 372 PRINTS Proline rich extensin signature 286 302 - -
Dere13g0621 372 PRINTS Proline rich extensin signature 326 351 - -
Dere13g0621 372 PRINTS Proline rich extensin signature 212 228 - -
Dere13g0621 372 PRINTS Proline rich extensin signature 304 321 - -
Dere13g0621 372 PRINTS Proline rich extensin signature 254 275 - -
Dere13g0621 372 FunFam splicing factor 3B subunit 4 109 200 - -
Dere13g0621 372 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Dere13g0621 372 MobiDBLite consensus disorder prediction 208 235 - -
Dere13g0621 372 FunFam Splicing factor 3b subunit 4 16 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0621 Dere-ChrDere13 7803500 7808528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0621 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.798 4.45e-19 87.0