Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0620 ATGGCTGAGTACGAGGACACATACGAAAGGAACCAAGGGGCCGCTGAAAATTATGGTGATTCCCCGCGACCACGTCATAGAAGCCATGGTGCTCCTGATGTTGACGGCGATTCCAAATCTCAACGTGGTTCTGAAGGGTTTGAAAGAGAATCTTCCAAAAGTAGGGAAAAGGAACGAGAGAAAGGGCATGATATAGATAGAAACAGAGACAGGGGTAGAGATTTGCAGAGAAGCAGAGACATGGATAGAAATAAGGAAAAGGAGAGGGAGAGGGATCGAGACAGGGGTCGTGAACGTCATCAAAGAGATCGGCATAGAGATCGCAGTGAGAGAAGGGAGCGAGGTAGGGATAGAAACAATGATGATGATTATTTCCGAGGACTGGACTATGAGAGGCAGAAGGATTATGATAGAGACAGAGAGGATAGGCACAGGAGGTCTCGCTCACGGTCAAAGGATAGATCTGAACACAGGTCAAGGTCAAGCTCAAAGACCAAAAGGATTAGTGGTTTTGATATGGCTCCTCCTACAATGTTAGCCAGCCCAGCTGTTACTGAAGGTCTGTTTCCTGGGACAAATCCTGCAGTTCCTAATATGCTTCAAAACATGTTCTCTTTGGGTCCGCAGTTTGGAATTTCGGTTACACCACCTGTTCAAGCAATGACACAACAGGCAACTAGACATGCTAGGAGGGTCTATGTTGGAGGGCTTTCTCCTACTGCAAATGAGCAGTCTGTTGCAACTTTTTTCAGCCAGGTTATGGCTAAAATCGGAGGAAACACCGCTGGTCCAGGTGATGCTGTTGTTAATGTTTACATTAACCATGAAAAAAAGTTTGCGTTTGTGGAAATGAGATCTGTTGAGGAGGCTAGTAATGCAATGGCTTTAAATGGAATTATCTTTGAGGGGGCTCCTGTCAAGGTGAGAAGACCCAGTGACTACAACCCTTCTCTGGCTGCAACCCTTGGTCCAAGCCAGCCTAACCCAAACCTCAACCTGGCTGCTGTAGGTTTATCACCTGGCACTTCGGGAGGACTGGAGGGTCCTGATCGCATTTTTGTGGGTGGGCTTCCCTATTACTTTACTGAGACCCAGATCAGGGAATTATTAGAGACTTTTGGTCCTCTTAAGGGTTTTGATCTGGTGAAAGACAGAGAAACAGGAAACTCAAAGGGCTATGCATTTTGTGTTTATCAAGATGTAGCGGTTACAGATATTGCTTGTGCTGCACTGAATGGCATAAAAATGGGAGATAAAACTCTCACAGTTAGACGGGCTAGTCAAGGTGCTGGCCAGCCTAAATCTGAGCAGGAGAGTGTATTAATGCATGCCCAGCAGCAGATTGCTCTCCAGAAGCTCATGCTTCAACCTCCTGTGGTGCCAACAAAAGTGATATGTTTAACTCAAGCAGTTTCCCCTGATGAGCTTAAAGATGATGATGATTATGAAGACATTGTTGATGACATGAGACAGGAGTGCGGAAAATTTGGCACTTTGGTCAATGTGGTTATCCCGCGTCCAAATCCAATGGGGGAACCATCTCCAGGCGTTGGGAAGGTGTTTTTGGAGTATGCGGATGTTGAAGGTGCTACTAGGGCTCGTGCTGGTTTGAACGGAAGAAAATTTGGTGGGAATGAAGTGATGGCTATCTTTTATGCTGAGGATCAATTTGCTCAGGGGGATTATGAAGGCTAG 1695 0.4614 MAEYEDTYERNQGAAENYGDSPRPRHRSHGAPDVDGDSKSQRGSEGFERESSKSREKEREKGHDIDRNRDRGRDLQRSRDMDRNKEKERERDRDRGRERHQRDRHRDRSERRERGRDRNNDDDYFRGLDYERQKDYDRDREDRHRRSRSRSKDRSEHRSRSSSKTKRISGFDMAPPTMLASPAVTEGLFPGTNPAVPNMLQNMFSLGPQFGISVTPPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALNGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGTSGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLKGFDLVKDRETGNSKGYAFCVYQDVAVTDIACAALNGIKMGDKTLTVRRASQGAGQPKSEQESVLMHAQQQIALQKLMLQPPVVPTKVICLTQAVSPDELKDDDDYEDIVDDMRQECGKFGTLVNVVIPRPNPMGEPSPGVGKVFLEYADVEGATRARAGLNGRKFGGNEVMAIFYAEDQFAQGDYEG 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0620 564 SMART rrm2_1 231 309 IPR003954 GO:0003676
Dere13g0620 564 SMART rrm2_1 464 550 IPR003954 GO:0003676
Dere13g0620 564 SUPERFAMILY RNA-binding domain, RBD 351 555 IPR035979 GO:0003676
Dere13g0620 564 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 55 562 IPR006529 GO:0003723|GO:0005634|GO:0006397
Dere13g0620 564 SMART rrm1_1 231 309 IPR000504 GO:0003723
Dere13g0620 564 SMART rrm1_1 464 550 IPR000504 GO:0003723
Dere13g0620 564 SMART rrm1_1 351 424 IPR000504 GO:0003723
Dere13g0620 564 PANTHER RNA-BINDING PROTEIN 38 562 - -
Dere13g0620 564 Gene3D - 341 446 IPR012677 -
Dere13g0620 564 Gene3D - 458 563 IPR012677 -
Dere13g0620 564 FunFam U2 snRNP auxiliary factor large subunit 458 563 - -
Dere13g0620 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 555 IPR000504 GO:0003723
Dere13g0620 564 CDD RRM1_U2AF65 229 311 - -
Dere13g0620 564 MobiDBLite consensus disorder prediction 20 165 - -
Dere13g0620 564 CDD RRM3_U2AF65 462 549 - -
Dere13g0620 564 MobiDBLite consensus disorder prediction 1 176 - -
Dere13g0620 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 421 IPR000504 GO:0003723
Dere13g0620 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 306 IPR000504 GO:0003723
Dere13g0620 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 487 547 IPR000504 GO:0003723
Dere13g0620 564 CDD RRM2_U2AF65 350 426 - -
Dere13g0620 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 313 IPR000504 GO:0003723
Dere13g0620 564 FunFam U2 snRNP auxiliary factor large subunit 327 440 - -
Dere13g0620 564 SUPERFAMILY RNA-binding domain, RBD 221 315 IPR035979 GO:0003676
Dere13g0620 564 Gene3D - 225 326 IPR012677 -
Dere13g0620 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 428 IPR000504 GO:0003723
Dere13g0620 564 FunFam U2 snRNP auxiliary factor large subunit 225 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0620 Dere-ChrDere13 7777381 7789889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0620 352 543 Eukaryotic Initiation Factors Gene Family AT1G22760 25.521 1.03e-06 49.7