Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0616 ATGAATCATCATCCTATTGAAGCTCATATGGCCCTCTTCTCTCCCCTCTACTCTCCTGGTGCATACACTCAACTTATCCCTCAACAAGGGGAGGGGAAGCGAAGACGACGTCGTAAGAAAGACAAAAACGCAGCTGTGGGAGCTATGAAGAAGAGGAAGCTTAGTGACGAGCAAGTGAATCTTCTGGAGCAACACTTCGGGAACGAACATAAACTGGAATCTGAAAGGAAGGACAGGCTGGCTTCGGAGCTTGGCCTGGATCCTCGTCAAGTGGCCGTTTGGTTTCAAAACCGAAGGGCCCGTTGGAAGAACCAGAAGATGGAGGAAGCCTTCTCCGACCTCAAGAAACTCCACGAAGCCACCCTTCTCGAGAAATGCCAACTTGAAACCGAGGTGTCGAAGCTGAAAGAGCAGATTTCGGAAGCAGAGAAGGAGATCCAACGGCTGTTAGAGCGCGGAGACAGAGTGTCACATCTGAGCAACAGTCCAAGCTCATCACAGTCAATGGAAGCTGTGGACCCACCATTTCTTGGGGAGTTCGGAGTCGATGGATACGATGATGATGAGTTCATCTACACGACAGACCATTACATGAATGGCATGGAGTGGTTCAATTTGTACATGTGA 627 0.496 MNHHPIEAHMALFSPLYSPGAYTQLIPQQGEGKRRRRRKKDKNAAVGAMKKRKLSDEQVNLLEQHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNQKMEEAFSDLKKLHEATLLEKCQLETEVSKLKEQISEAEKEIQRLLERGDRVSHLSNSPSSSQSMEAVDPPFLGEFGVDGYDDDEFIYTTDHYMNGMEWFNLYM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0616 208 Gene3D - 42 114 - -
Dere13g0616 208 Pfam Homeodomain 51 104 IPR001356 GO:0003677
Dere13g0616 208 SMART HOX_1 48 109 IPR001356 GO:0003677
Dere13g0616 208 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Dere13g0616 208 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Dere13g0616 208 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Dere13g0616 208 CDD homeodomain 50 106 IPR001356 GO:0003677
Dere13g0616 208 FunFam homeobox-leucine zipper protein ATHB-40 44 113 - -
Dere13g0616 208 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Dere13g0616 208 MobiDBLite consensus disorder prediction 27 50 - -
Dere13g0616 208 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 165 IPR045224 GO:0003700
Dere13g0616 208 MobiDBLite consensus disorder prediction 32 46 - -
Dere13g0616 208 SUPERFAMILY Homeodomain-like 49 112 IPR009057 -
Dere13g0616 208 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0616 Dere-ChrDere13 7744311 7745927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0616 1 208 Homeobox Transcription Factor Family AT2G18550 52.232 2.12e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Dere13g0616 Homeodomain 3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0860 09 11473153 11474805 Dere13g0616 13 7744311 7745927 CCT
Dere13g0616 13 7744311 7745927 Dere13g0616 13 7744311 7745927 ECH