Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0607 ATGGCGAGTGGTTTTGGGGAATCAACGAGCACGTATCCTCAAAGCCCATCTTGCTCCGGGAACGGTTCGAATGATGCTGGAGATTTTGAATGCAATATCTGTTTCGATTTAGCCCAGGACCCAGTTATTACTCTGTGTGGTCATCTATTCTGTTGGCCATGCCTCTATCGATGGCTCCACCATCACTCGCATTCTCAAGAATGCCCGGTTTGCAAGGCTCTTATACAGGAGGAAACATTGGTTCCGCTGTATGGGAGGGGCAAATCACAAACTGATCCCAGAACAAAGTCATATCCTGGAATGGAAATTCCCCACCGCCCTACAGGGCAGAGGCCTGAAACAGCACCTCCACCAGAAGCAAATCCGTTCGGGAGTTATGGGTTTGGGTTGATGGGAGGATTCATACCCATGGCAACAGCAAGGATTGGGAATTTCACACTTGCTACAGCCTTTGGTGGTTTTATTCCATCGCTTCTTAACATTCAATTCCATGGTTTTCAAGATGCCACTGTCTATGGAACAACTTCTGGTTATCCGTTTGGATTTAATACCTTTCATGGAGGTCACGCACATGGTTTTGCCCAGCCAACTGGGCAAGGCTACCGGCATGAGGACAATGTTTTGAAGAATCTTCTTTTGTTGATTGGTGTACTTGTTCTCCTTGCTCTCATTTTTGGGTGGTAA 684 0.4693 MASGFGESTSTYPQSPSCSGNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALIQEETLVPLYGRGKSQTDPRTKSYPGMEIPHRPTGQRPETAPPPEANPFGSYGFGLMGGFIPMATARIGNFTLATAFGGFIPSLLNIQFHGFQDATVYGTTSGYPFGFNTFHGGHAHGFAQPTGQGYRHEDNVLKNLLLLIGVLVLLALIFGW 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0607 227 SUPERFAMILY RING/U-box 27 84 - -
Dere13g0607 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 93 IPR013083 -
Dere13g0607 227 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Dere13g0607 227 SMART ring_2 31 71 IPR001841 -
Dere13g0607 227 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 15 85 - -
Dere13g0607 227 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Dere13g0607 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dere13g0607 227 MobiDBLite consensus disorder prediction 85 118 - -
Dere13g0607 227 CDD RING-HC_AtRMA-like 29 73 - -
Dere13g0607 227 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0607 Dere-ChrDere13 7554437 7555120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0607 21 225 C3H Transcription Factor Family AT2G23780 61.972 2.01e-90 264