Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0604 ATGGCTTCTCAAGGCATGCATACCATCCTTTGGCGCTTTGTGTTCACTATAATGATTGTGACCATTTTCAGTGCGAACCATAGTAATGCGAAGCAATCAAAGATAAGTGGGTTAAAAATGAATGTGATTGATCAGTGCTGGAGATGGCACCCAGAATGGCGGAGACACAGGCCACAACTCGCCTCATGCTCTGTTGGCTATGCAGGCAAGATGACAAATAACATTGGGAAGGATCTTATCCACTACAACGTTACTGATCCAAGTGACGACGCCATTAACCCGAAACCCGGAACACTGAGATACGGAGCATCTCTGATCCAAGGAAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAGCTCGCTAGACCCCTTCTCATCAGCAGCTTCACCGCCATTGATGCCCGAGGTGTCAACGTTCACATTGCTCGTAATGCATGCTTGATCGTCTACAAGGCCACCAACGTAATCATCCATGGGCTTCGGATCCATCACTGCAGGCCTCAAGCTCCAGGGATGGTGATGGGTGGTGAAGGGAAGGTAATATCACTGGGTAAGGTAGATGGAGATGCAATCAGATTGGTTACAGCTTCAAAGATTTGGATCGACCACAATACTCTATACAATTGCCATGATGGCCTTCTGGACGTCACGAGGGGTTCCACCGATGTCACGGTGTCCAATAACTGGTTCAGAGAGCAGAACAAGGTTATGCTTCTTGGACACGATGATGGCTATGCCAGAGACCAGAACATGAAGGTCACTGTTGTGTATAATCATTTTGGACCCAACTGCAACCAACGCATGCCCAGGATACGACATGGGTATGCACATGTTGCCAACAATTTGTACCAAGGATGGGTGCAATACGCCATTGGTGGCAGCATGGAACCCAGCCTCAAAAGCGAAGCCAACCTCTTCATAGCACCAACGTCAGGGAGTAAAGAGGTGACATGGAGAAAAGGCAATAATGGGAGTGGAGGAGCATGGGAATTTCATTCTGTGAGGGACGTCTTTGAGAACGGAGCTTCCTTCACAGAAACAAAAGGTGGACGAGTGCCAAAACCTTATTATAACGCTGAACAGAGTTTCAAAGTTGCAGATGCCACATGTGTGAGGTCATTAACTATCTCATCAGGCGCATTACGATGCAGTAGAACCTCTAGGTGCTGA 1176 0.4745 MASQGMHTILWRFVFTIMIVTIFSANHSNAKQSKISGLKMNVIDQCWRWHPEWRRHRPQLASCSVGYAGKMTNNIGKDLIHYNVTDPSDDAINPKPGTLRYGASLIQGKVWITFQRDMHIKLARPLLISSFTAIDARGVNVHIARNACLIVYKATNVIIHGLRIHHCRPQAPGMVMGGEGKVISLGKVDGDAIRLVTASKIWIDHNTLYNCHDGLLDVTRGSTDVTVSNNWFREQNKVMLLGHDDGYARDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKGNNGSGGAWEFHSVRDVFENGASFTETKGGRVPKPYYNAEQSFKVADATCVRSLTISSGALRCSRTSRC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0604 391 PANTHER PECTATE LYASE 18-RELATED 28 388 IPR045032 GO:0030570
Dere13g0604 391 SMART amb_all 117 314 IPR002022 -
Dere13g0604 391 Pfam Pectate lyase 138 308 IPR002022 -
Dere13g0604 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Dere13g0604 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Dere13g0604 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Dere13g0604 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Dere13g0604 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Dere13g0604 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Dere13g0604 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Dere13g0604 391 Gene3D - 40 384 IPR012334 -
Dere13g0604 391 SUPERFAMILY Pectin lyase-like 62 383 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0604 Dere-ChrDere13 7504648 7506104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0604 71 323 Polysaccharide Lyase AT5G09280 73.123 7.23e-144 409