Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0600 ATGGAGGGTGTTTATTTTCTTCATACGGAGCTTGAATTTCTTAATACCAACTTAAATTGTCCATCACTTCTCAAAATTCAGATTTTTCTTGTTTACTTTCTCTGGGGAATAAGTTTGCCAACTTGCTCGCAAATAATATTTCGTATTATGGGTTGGTTTACCAAGTTGATTAAGGGATCCAACCATAAAATTTCAAGCGGACAATACCATGGGAAATATGCAAATGACAGAATTTGGGATGATCATCGTAATTCAGTGGATGATTTGACGGATATTGAGAAAGAAGAAATTGATTGTGCAATTGCACTCTCTCTATCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTGAGGATGACTCTCAGTCAGAAGAAGATGAAGAACTTTGTAAAATTGATGAGGAGGAAGATGAACATCTTGGTAAAGTTCAAGAAGAGGAAGATGAGCATCTTGCTAGCATTCAAAGGGAGGAAGATGAACATCTTACAAAAGTTCAACTTGAGGAAGATGAACAACTTGCAAGAGCAATTCAAGAAAGTTTAAACATGGGTTCTCCTCCTCGACATGACATTGGTTCTTTATTTCAGCCATTTCCTCTCTTCCCACCTGGATACAGGATCTGTGCTGGCTGCAACAGTGAGATTGGCCATGGAAGATTTTTAAGCTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCCGCTGTCATGCCTGCAATCTGCCAATTACTGATCATGAGTTTTCCATGTCTGGCAATCGCCCTTACCATAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAACTTCATCCCAACAAATTCGGCTGGCCTCATTGAATATAGAGCACATCCTTTCTGGTCACAAAAGTACTGTCCATCACATGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGTCAAGAGACGCAAAATATCTTTTGCTTGATGATGGCCGTAAGCTATGTCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAACCACTTTACCTTGAAATACAAGATTTTTATGAAGGTTTAAACATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCCTGTCTGAAGAGCAGACTGTCACCACTATTCTGAAGAGACCAAGGATCGGGGCAGGATATCGGGTCATAGACATGATAACTGAGCCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTGTTTTGTATGGCCTTCCAAGGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTACCCCAATCTGAGCCCAGAAGTAGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCTGAGATATATTCTGGATCCGGGAGCGATGGTGCATCATCCTCATCCTCGTCGTCCTCATCATCCTCACCTTCCTCCTCTTCCTCCAGGTCATCAAAGAAGGGCAAAAGATCCGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCGTCAGCTTATGGAGATGGATTCAGACTGGGTAACAAGGCAGTGTCCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCGGATGACAGGAAGTTTTCCATATTGA 1737 0.4231 MEGVYFLHTELEFLNTNLNCPSLLKIQIFLVYFLWGISLPTCSQIIFRIMGWFTKLIKGSNHKISSGQYHGKYANDRIWDDHRNSVDDLTDIEKEEIDCAIALSLSEEDQKGKKVIEDDSQSEEDEELCKIDEEEDEHLGKVQEEEDEHLASIQREEDEHLTKVQLEEDEQLARAIQESLNMGSPPRHDIGSLFQPFPLFPPGYRICAGCNSEIGHGRFLSCMGGVWHPECFRCHACNLPITDHEFSMSGNRPYHKSCYREQHHPKCDVCKNFIPTNSAGLIEYRAHPFWSQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQDFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILKRPRIGAGYRVIDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSGSGSDGASSSSSSSSSSSPSSSSSRSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVSKYGLRRTLDHIRMTGSFPY 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0600 578 ProSiteProfiles LIM domain profile. 205 265 IPR001781 -
Dere13g0600 578 FunFam Protein DA1-related 1 201 260 - -
Dere13g0600 578 Pfam Protein DA1 356 573 IPR022087 -
Dere13g0600 578 MobiDBLite consensus disorder prediction 496 518 - -
Dere13g0600 578 Gene3D Cysteine Rich Protein 203 266 - -
Dere13g0600 578 MobiDBLite consensus disorder prediction 496 525 - -
Dere13g0600 578 PANTHER PROTEIN DA1-RELATED 2 52 578 IPR045218 -
Dere13g0600 578 SMART uim 92 111 IPR003903 -
Dere13g0600 578 SMART uim 167 186 IPR003903 -
Dere13g0600 578 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 288 - -
Dere13g0600 578 Coils Coil 139 159 - -
Dere13g0600 578 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 167 186 IPR003903 -
Dere13g0600 578 ProSitePatterns LIM zinc-binding domain signature. 207 241 IPR001781 -
Dere13g0600 578 SMART lim_4 206 258 IPR001781 -
Dere13g0600 578 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 232 - -
Dere13g0600 578 CDD LIM_DA1 207 259 - -
Dere13g0600 578 Pfam LIM domain 207 262 IPR001781 -
Dere13g0600 578 CDD LIM 234 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0600 Dere-ChrDere13 7453621 7459133 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere13g0600 DA1-like 3.1e-107 CL0126