Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0572 ATGCCGTCGGAGTCCGGCCAGAACCCCCGACCATCCAAACCCCAAGCTCCGCCGCCGGAACAAGAGCACCTTCCATGCCCTCGCTGCGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCGCGCCACTTCTGCAAGTCCTGCCGTCGCTACTGGACCCACGGAGGGACCCTTCGTGACATCCCCGTCGGCGGTGGCAGTCGGAAAAACGCTAAGCGCTCTCGCACTGCTTCTGCGGCTTCGTCCTCCGTCACGGCGACTTCTTCGGTTTCTACTCAGGACCACCCGTTGCCTACGACCCCTGTATTTGTACCCATCTCGGCTAACCAAGCAGGGTCTATGCCGTTTGGGGCTGCCGGTGGAGTTGAGAGTGACGTGAAGTCTAATATGGGCATGTGTGGAAGCTTTACTTCTTTGCTTAGCAACACTACCCAAGGGCCTGGGTTTCTGGCTCTAGGCGGGTTTGGCCTCGGGCTTGGGCATGGGTTTGAAGAAATGGGATTTGGGAGTGGCAGAGGAGGTTGGGCTTTTCCCGGAATGGTGGATGGGTCTAACATTGGCGGTGGAGTTGGCGCTTCCAGTGTGGGGAATTCATGGCAGCTAGAAAGTGGCGAAGGTGGGTTTGTTAGTGGTACAGACTGCTTCTCTTGGCCTGGACTTGCTATTTCAACACCTGGAAATGGTCTGAAATGA 711 0.5654 MPSESGQNPRPSKPQAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTASAASSSVTATSSVSTQDHPLPTTPVFVPISANQAGSMPFGAAGGVESDVKSNMGMCGSFTSLLSNTTQGPGFLALGGFGLGLGHGFEEMGFGSGRGGWAFPGMVDGSNIGGGVGASSVGNSWQLESGEGGFVSGTDCFSWPGLAISTPGNGLK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0572 236 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Dere13g0572 236 MobiDBLite consensus disorder prediction 1 26 - -
Dere13g0572 236 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Dere13g0572 236 MobiDBLite consensus disorder prediction 65 104 - -
Dere13g0572 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 149 IPR045174 GO:0003700|GO:0006355
Dere13g0572 236 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Dere13g0572 236 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0572 Dere-ChrDere13 7155680 7156390 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0572 20 236 C2C2-Dof Transcription Factor Family AT3G50410 54.274 1.79e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere13g0572 zf-Dof 3.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0572 13 7155680 7156390 Dere13g0572 13 7155680 7156390 ECH