Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0560 ATGTCATCATCGAATTCTCCGTGCGCTGCGTGCAAGCTTCAGAGGCGAAAATGCACCCAAGAATGCGTCTTCGCACCGTACTTTCCACCGGACAACCCTTATAGGTTTTCTTGCGTCCACAAGGTGTTCGGCGCCAGCAATGTGGCTAAGCTTCTCAACGAGCTCAGCGCGGCGCAACGCGACGACGCCGTCAAGTCTTTAGCTTATGAAGCTGAGGCGCGGCTCCATGACCCCGTGTACGGCTGCGTGGGTTTCATTTCCGTGCTCCAGCAGAGGCTAAAGGCAATACAAAGTGAACTCAACAATGCGAAGAAGGAGCTAGCAACATATATTGGACCTCAGGCTCTACAGCCCATGCCTGTTTTAAATCCTCATGGAATGATGGCGCAGCAGCAGCACCAACAGGGGAATCTTTATGGTTCCGCCGTTTTCCCATACAACAACATGCCACCGCCGAACATGGCGGGGGTACCAGCTGGGACGGCTGCCGCCGTGCAGGGCGGACATTTGATGATTCGTGAACCTCACCAGCCGCATCAGCACCATCATCAGCTTGCCCAGCAGCATCAGCACCATCATCAACTTGCCCAGCAGCAGATGTTGGAGGCGCAGCAATTAGCGGCGGTTAGGGAGCAGCAGGAGATGTTTGGGGGTTATGATCAGCTACAGCAGCAGCAGCAGCAGCAAGAGTTTCTGAGATTTCATGGCGGAGGTGGGTTTGAGATGGGTTCGGTTTCTGGGAGTGGATTTAACCAACCTGCTGAGATGTCGCCTTCGTTGGCTCTGGGCACGTTTGAGAACCCCTTCCACCAGATTCAACTGCAGCAAGGCCAAGGAGAATATCATCAACCTCTGCTTCCGCACCATCAACTTCAGGCGCAGCTAATGCAACAGCAGCAACAACCCCAACCTCAAACGCAGCAACAATACCACCAACAACAGTCGGAAAGCGAGGGTAGGAGCGTCGGTCCTTCTTCTTGA 981 0.5413 MSSSNSPCAACKLQRRKCTQECVFAPYFPPDNPYRFSCVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLHDPVYGCVGFISVLQQRLKAIQSELNNAKKELATYIGPQALQPMPVLNPHGMMAQQQHQQGNLYGSAVFPYNNMPPPNMAGVPAGTAAAVQGGHLMIREPHQPHQHHHQLAQQHQHHHQLAQQQMLEAQQLAAVREQQEMFGGYDQLQQQQQQQEFLRFHGGGGFEMGSVSGSGFNQPAEMSPSLALGTFENPFHQIQLQQGQGEYHQPLLPHHQLQAQLMQQQQQPQPQTQQQYHQQQSESEGRSVGPSS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0560 326 Coils Coil 86 106 - -
Dere13g0560 326 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Dere13g0560 326 MobiDBLite consensus disorder prediction 293 326 - -
Dere13g0560 326 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 204 - -
Dere13g0560 326 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0560 Dere-ChrDere13 7031177 7032157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0560 1 252 AS2 family AT5G66870 50.376 1.06e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere13g0560 LOB 1.3e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0560 13 7031177 7032157 Dere09g0779 09 10744557 10745498 CCT
Dere13g0560 13 7031177 7032157 Dere13g0560 13 7031177 7032157 ECH