Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0552 ATGGGTCTCTGCAGTTCAAAACCATCTGCAAATCTCACTCTTTCGTCTCCCGAATCCGATACTAAATCGCCCAGTAATAACCATCAACCTGCTAGAGACAACTCTGTACCAGTTAATGACAGTTCTAAACCTCATTCGAGCTCTGTGAACGGAGAAAACCCTAGCAACGAGAAGAAGGAGCGGGAGAACGGTAAAAAATCGCCGTTCTTTCCGTTTTACAGCCCAAGTCCGGCACACTATTTGTTCTCAAAGAAGTCTCCGGCGAGATCTCCGGCGAATGGGGGCTCGAACTCCGCGACGAATAGGTTCTTCAAGCGGCCGTTCCCGCCACCGTCACCGGCGAAGCACATAAGAGCTGTGCTGGCCAGGCGGCATGGGTCAGTGAAGCCGAATGAGGCTTCGATACCAGAAGGGAGCGAAGCAGAGGTGGTTGCTGGGCTTGATAAGAGTTTTGGGTTCTCGAAGCATTTCGGGAACAAGTATGAACTTGGAGATGAGGTTGGGAGAGGGCACTTTGGATACACTTGTGCTGCCAAGTTTAAGAAGGGTGAGCTCAAGGGGCAACAGGTGGCTGTGAAAGTCATCCCGAAAGCAAAGATGACCACTGCCATTGCCATTGAGGACGTGAGAAGGGAAGTAAAAATATTGAGAGCTTTGACAGGACATAAGAATCTAATACAATTCTATGATGCATACGAAGACCAGGATAATGTCTATGTAGTAATGGAGTTGTGCGAAGGAGGGGAGCTATTGGACAGAATACTATCAAGAGGTGGGAAATACTCAGAGGATGATGCAAAAGCTGTAATGATACAAATACTGAATGTTGTTGCATTCTGCCATTTACAGGGTGTTGTACATCGTGATCTTAAACCCGAGAATTTCTTGTTTACATCAAAGGATGAAAACTCAGAGCTTAAGGCCATAGACTTTGGGTTGTCAGATTTTGTAAAACCGGATGAAAGGCTTAATGATATTGTTGGCAGCGCTTACTATGTGGCTCCTGAAGTTCTACATAGATCTTACACTACGGAGGCTGATGTCTGGAGTATTGGTGTGATTGCATATATTCTTTTATGTGGAAGCCGTCCATTTTGGGCCCGAACTGAGTCTGGAATCTTCCGTGCTGTACTGAAAGCTGATCCAACTTTCGATGAACCTCCTTGGCCTTCTCTGTCAGCTGAGGCAAAGGACTTTGTTAAAAGGCTACTGATTAAAGATCCAAGGAAACGAATGACTGCTGCACAGGCATTAAGTCATCCCTGGATTAAAAATTATAAGGATGTAGTAGTACCTTTGGATATTCTAATATTCAAGCTCATGAAGGCATACATGCGTTCTTCATCTCTACGGAAAGCAGCTTTAAGGGCACTTTCTAGGACATTGACCGCTGATGAGCTATTTTACTTGAAGGAGCAGTTTAAGCTTTTAGAGCCCAATAAAAATGGTACCATAAGCTTGGAAAATATCAAAGCGGTCTTGATGAAAAATGCGACAGATGCCATGAAAGAGTCACGCATTCCTGACTTTCTGGCATCACTTAACGCATTGCAATATAGAAGGATGGACTTTGATGAGTTCTGTGCAGCTGCACTCAGTGTACATCAACTTGAATCGCTTAGTCGGTGGGAGCAACATGCTCGCTGTGCCTATGAACTGTTTGAAAAAGATGGAAACCGGGCTATTGTCATTGAGGAACTAGCTTCGGAGCTTGGCCTTGGTCCATCGGTCCCTGTTCATGCTGTTCTTCATGATTGGATTAGACACACTGATGGAAAGTTAAGCTTCCTTGGGTTTGTCAAATTGTTGCATGGACCATCTCGGAGTCTTGCAAAAGCTTAA 1842 0.4501 MGLCSSKPSANLTLSSPESDTKSPSNNHQPARDNSVPVNDSSKPHSSSVNGENPSNEKKERENGKKSPFFPFYSPSPAHYLFSKKSPARSPANGGSNSATNRFFKRPFPPPSPAKHIRAVLARRHGSVKPNEASIPEGSEAEVVAGLDKSFGFSKHFGNKYELGDEVGRGHFGYTCAAKFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFYDAYEDQDNVYVVMELCEGGELLDRILSRGGKYSEDDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYTTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPTFDEPPWPSLSAEAKDFVKRLLIKDPRKRMTAAQALSHPWIKNYKDVVVPLDILIFKLMKAYMRSSSLRKAALRALSRTLTADELFYLKEQFKLLEPNKNGTISLENIKAVLMKNATDAMKESRIPDFLASLNALQYRRMDFDEFCAAALSVHQLESLSRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKA 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0552 613 SMART serkin_6 161 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0552 613 FunFam CDPK-related kinase 1 154 249 - -
Dere13g0552 613 Gene3D - 441 602 - -
Dere13g0552 613 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Dere13g0552 613 MobiDBLite consensus disorder prediction 1 53 - -
Dere13g0552 613 MobiDBLite consensus disorder prediction 83 111 - -
Dere13g0552 613 FunFam CDPK-related kinase 1 458 532 - -
Dere13g0552 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Dere13g0552 613 MobiDBLite consensus disorder prediction 1 71 - -
Dere13g0552 613 SUPERFAMILY EF-hand 451 605 IPR011992 -
Dere13g0552 613 Pfam Protein kinase domain 161 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0552 613 Gene3D Transferase(Phosphotransferase) domain 1 251 435 - -
Dere13g0552 613 Gene3D Phosphorylase Kinase; domain 1 154 250 - -
Dere13g0552 613 FunFam CDPK-related kinase 3 153 325 - -
Dere13g0552 613 ProSiteProfiles Protein kinase domain profile. 161 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0552 613 MobiDBLite consensus disorder prediction 89 103 - -
Dere13g0552 613 SUPERFAMILY Protein kinase-like (PK-like) 158 449 IPR011009 -
Dere13g0552 613 Gene3D - 463 532 - -
Dere13g0552 613 FunFam Calcium-dependent protein kinase SK5 333 428 - -
Dere13g0552 613 CDD STKc_CAMK 160 422 - -
Dere13g0552 613 ProSitePatterns Protein kinases ATP-binding region signature. 167 193 IPR017441 GO:0005524
Dere13g0552 613 PANTHER SERINE/THREONINE-PROTEIN KINASE 145 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0552 Dere-ChrDere13 6981854 6986529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0552 1 613 EF-hand Containing Proteins AT3G50530 76.279 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere13g0552 Pkinase 3.4e-71 CL0016