Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0529 ATGTCTGGCGAAGAATCTCCAGCTTTGGCGTCGCAGGGGCACAAAGTGGACGACATATCAGAGGATAACTTAAACCTTGCTCAGTTGACCAAGACTTTCAAACCCAAGTCTCCTCTACCCACGGATTTAGAGGGTTCCAGTTAAATTAAGATTTATTTCCCTGCTGTATCAAGTCAGGCACAGAACTTAGCAAGCTCCATTCATGTTGCAATAGATGGGACATCCTCTCGTGGCAAGGCCAAGTCATCTGCTGTGATCCGAGCAGAGGAGTTTCAATTTAATTTAGAACCGGAATTTCCTAGCTTCGTGAAGTCATTAGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGCCTCCCAGGATTCTTCTGTAAAAGCCACTTACCGGATAAGGATATAACAATCACTCTGGAAGATGAATCTGCCAAAGAGTACAAATTGAAATATATCGCTTGTAAGGCAGGACTGAGTGCTGGTTGGAGACAGTTTTCCGTTGGGCACAAATTGCAAGAGGGAGATGTTTTGGTCTTCCAATTAGTTAAACCTACAAAATTTAAGGTTTATATAGTAAGAGCTAATGATTTGAGCGAGCTGGATGGGGCTCTTTCCCTTTTGAATCTGGACAGTTATACAAGAAAAGAGGGAGATACAGAAAATGCACATACATATGATGCAGTAGCAACTAATAGTTCAAAAAGAAAATCTGATGAATATGTCTCGGTACTTGTCCCAAAGAAGAAAAGGGCTAGTGTTTCAAGATTGACTTCTAAGGTTAGGCAATCTGCAGAACAATCTGAAAATGATAGCGAGGAAGTTCGTTCAGAAGTATTGGAGGGCTTCAAACCAAGGCTTGAATTTAAAGACAAAAAACGTTTTAAAAATTTCAGCATCATAATTAATGGAAAGCCAATAGATGCTGAGCTCTCTAAGGAAGTTCGAAACAAGTACTACAAGCTCTGCTGCAGTCAGCAGGCCTTTCTTCATGGCAATCTCATTAAGGGCATGAACTACAACTTAATTGTTGGAATTATATCAGACACTGTTAGCATTGCTGATGCTATAAAGACTAGCACCCCAAAGTACCTCCCGTGTTGA 1095 0.4091 MSGEESPALASQGHKVDDISEDNLNLAQLTKTFKPKSPLPTDLEGSSXIKIYFPAVSSQAQNLASSIHVAIDGTSSRGKAKSSAVIRAEEFQFNLEPEFPSFVKSLVRSHVASCFWMGLPGFFCKSHLPDKDITITLEDESAKEYKLKYIACKAGLSAGWRQFSVGHKLQEGDVLVFQLVKPTKFKVYIVRANDLSELDGALSLLNLDSYTRKEGDTENAHTYDAVATNSSKRKSDEYVSVLVPKKKRASVSRLTSKVRQSAEQSENDSEEVRSEVLEGFKPRLEFKDKKRFKNFSIIINGKPIDAELSKEVRNKYYKLCCSQQAFLHGNLIKGMNYNLIVGIISDTVSIADAIKTSTPKYLPC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0529 364 Pfam B3 DNA binding domain 102 192 IPR003340 GO:0003677
Dere13g0529 364 Gene3D - 78 196 IPR015300 -
Dere13g0529 364 SMART B3_2 102 193 IPR003340 GO:0003677
Dere13g0529 364 SUPERFAMILY DNA-binding pseudobarrel domain 95 193 IPR015300 -
Dere13g0529 364 ProSiteProfiles B3 DNA-binding domain profile. 102 193 IPR003340 GO:0003677
Dere13g0529 364 CDD B3_DNA 100 191 IPR003340 GO:0003677
Dere13g0529 364 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 71 193 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0529 Dere-ChrDere13 6587926 6591116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0529 80 240 B3 DNA Binding Superfamily AT3G19184 42.857 9.92e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere13g0529 B3 4.3e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0529 13 6587926 6591116 Dere13g0529 13 6587926 6591116 ECH