LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g0526	ATGGCGTCTCGCGGTAGGGTAGGTGGTGGAGGATTACTGCCGGATCAAGAGCAGGAGAATTCTATTATAGTGTCGGCCCTCGTCCACGTGATCTCATCTGGAGCTGCTATTCATGATGATCCTGGTGACCCCACCAAATCTTACAACTCAGCAGCCACGTCATGCAGCTCTGGGACCACTCTCTACCAATCAAGTTCTGGTGATGCTGACACGTGTGGGGCTTGCCAAATACACGGCTGTCTCGGCTGCAACTTCTTCTTCCCGACCTCGCATGAAGTTGAAAAGCAGAGAAGGGAGACAAAGAGGAAGAGGTATAGAGGGGTGAGGCAGAGGCCCTGGGGCAAGTGGGTGGCTGAGATTCGAGATCCTCATCGAGCGGCTCGGGTCTGGCTGGGGACGTTTGAGACGGCTGAGAAAGCCGCGAGGGCTTATGACCAAGCTGCCATTAGCTTTCATGGGGCTCGAGCTAAGATAAATTTTCAGTTCTCTGACTATGAACAGAAGCAGAGCACGGCGGAGACACAACAAGTTGGAGAGGCTGTAGGGTCAAATTCTGAGCAGAGGGAAGGGAAGAAGACGATGAATTTGCCTTCGTCGTCAATCCTTGTTTTTTCTTCTGGACTTCGCATGTTGGTTTTGTTGGAGTATTTTGAGGCTTCCTAG	663	0.5189	MASRGRVGGGGLLPDQEQENSIIVSALVHVISSGAAIHDDPGDPTKSYNSAATSCSSGTTLYQSSSGDADTCGACQIHGCLGCNFFFPTSHEVEKQRRETKRKRYRGVRQRPWGKWVAEIRDPHRAARVWLGTFETAEKAARAYDQAAISFHGARAKINFQFSDYEQKQSTAETQQVGEAVGSNSEQREGKKTMNLPSSSILVFSSGLRMLVLLEYFEAS	220

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g0526	220	PRINTS	Ethylene responsive element binding protein signature	127	143	IPR001471	GO:0003700\|GO:0006355
	Dere13g0526	220	PRINTS	Ethylene responsive element binding protein signature	105	116	IPR001471	GO:0003700\|GO:0006355
	Dere13g0526	220	FunFam	Ethylene-responsive transcription factor 2	103	162	-	-
	Dere13g0526	220	ProSiteProfiles	AP2/ERF domain profile.	104	161	IPR001471	GO:0003700\|GO:0006355
	Dere13g0526	220	Pfam	AP2 domain	104	153	IPR001471	GO:0003700\|GO:0006355
	Dere13g0526	220	SMART	rav1_2	104	167	IPR001471	GO:0003700\|GO:0006355
	Dere13g0526	220	SUPERFAMILY	DNA-binding domain	104	162	IPR016177	GO:0003677
	Dere13g0526	220	PANTHER	DNA-BINDING DOMAIN	66	184	IPR044808	GO:0003700\|GO:0009873
	Dere13g0526	220	MobiDBLite	consensus disorder prediction	171	192	-	-
	Dere13g0526	220	Gene3D	AP2/ERF domain	103	162	IPR036955	GO:0003700\|GO:0006355
	Dere13g0526	220	CDD	AP2	103	161	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g0526	Dere-ChrDere13	6566462	6567363	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g0526	17	165	AP2-EREBP Transcription Factor Family	AT4G34410	46.111	5.68e-39	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere13g0526		AP2	4.5e-15	CL0081