Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0524 ATGTCGCAACGATCGGTGCCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTGGATGATGCGAGCACGGACGACGTGATATCGTGGAGCGAAAGCGGCGAGACATTCGTGGTGTGGAAGCATGCGGATTTTGCGAAGGATTTGCTTCCCAATTATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTTAACACCTATGGATTCCGAAAGATAGTTCCCGACAAATGGGAATTCGCCAACGAATATTTCAAGCGAGGTCGCAAGGAGCTCCTCTCCGAAATCAAACGCCGGAAGACCGTGACTCAACCGTCGGCTCAGGCCGGCGGGAAGTCCGGCAGCGGCGGAGGCGGAAATTCCGCGTCGAACTCCGGCGGCGACGACGTGGGGTCCACCTCCACGTCGTCGAGCGATTCGAAGAATAATAATCCGGGATCGGTGGAGACGATGGCTCCACAATACGCAGAACTGTCCGGGGAGAACGAGAAATTGAGAAAAGATAATAAAATGCTGAGCTCGGAGCTTGCGGAGGCGAAGAAGCAGTGCGCGGAGCTGGTGGCTTTTCTGACGGAGTATCTCAAAGTGGGACCCGATCAGATAACTCGTATAATGCGGCAAGGAAGTAGTGGGTCCAGCCGCGACGAAGAAGAAGATGACGACGATGATGACGAAAAGGAGGTAGGTGGAGGAGGAGAGAGTCTGAAACTGTTTGGCGTTTGGTTGAAAGGTGAGAAAGATGAGGTGAAGAAGGAGAAAACGAGCACCAACAACCACAAGAGGACGCGCGAAGACCAAATGGGCTTCGGTGGGCCTCACCGAAAGGAGCTCAAGAATGTTGAACTTAGTGCTGCTCCAGTGAATGTGATGATCAATTGA 879 0.5324 MSQRSVPAPFLTKTYQLVDDASTDDVISWSESGETFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGRKELLSEIKRRKTVTQPSAQAGGKSGSGGGGNSASNSGGDDVGSTSTSSSDSKNNNPGSVETMAPQYAELSGENEKLRKDNKMLSSELAEAKKQCAELVAFLTEYLKVGPDQITRIMRQGSSGSSRDEEEDDDDDDEKEVGGGGESLKLFGVWLKGEKDEVKKEKTSTNNHKRTREDQMGFGGPHRKELKNVELSAAPVNVMIN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0524 292 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 222 IPR027725 -
Dere13g0524 292 MobiDBLite consensus disorder prediction 214 228 - -
Dere13g0524 292 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0524 292 Coils Coil 155 182 - -
Dere13g0524 292 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0524 292 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0524 292 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0524 292 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0524 292 MobiDBLite consensus disorder prediction 198 233 - -
Dere13g0524 292 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Dere13g0524 292 FunFam Heat stress transcription factor B-4 2 100 - -
Dere13g0524 292 MobiDBLite consensus disorder prediction 247 280 - -
Dere13g0524 292 Gene3D - 2 101 IPR036388 -
Dere13g0524 292 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0524 292 MobiDBLite consensus disorder prediction 96 149 - -
Dere13g0524 292 MobiDBLite consensus disorder prediction 99 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0524 Dere-ChrDere13 6556780 6559273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0524 2 284 HSF AT4G36990 55.749 9.87e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere13g0524 HSF_DNA-bind 9.2e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0751 09 10319536 10321672 Dere13g0524 13 6556780 6559273 CCT
Dere13g0524 13 6556780 6559273 Dere13g0524 13 6556780 6559273 ECH