Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0516 ATGACACGTTCGATCCGGTTTAGGCATTTTGGTCACAGGCGGTTCGCTAAAATATCCGACTCAATATTAAGCCGGAAGCCCCAGACCTTGAAATCCCAATTGCAATTCCAATCCGTGATTTCCCAAGGGGGCGAGTGGATTTCTCCCCCTGCGGCTGTCGGTTCCCTGTTGTTGCATATTGTTGAAGCTTCCATGGAGCAGCGAAAACTTGTGGTTTTGGGTATTCCTTGGGAAGTCGATACTGAGGGGTTGAGAGAGTATATGAGCAAATTTGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGCCGGTCTCGTGGTTTTGGTTATGTTACATTTGCTTCAGTTGATGATGCTAAGAATGCATTATCAAATGAACACGTTCTTGGCAACAGGATGCTGGAGGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTTAAAAAAGTTACAAGGATTTTTGTGGCCAGGATTCCACCATCTGTGACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACGGATTTATACATGCCAAAGGATCAAGGCTCAAAAACACACCGTGGAATTGGTTTTATAACTTTTGCTAGTGCAGAATCTGTGGAAAATTTGATGGCTGATACTCATGAACTGGGTGGTTCTACTGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAGGCCTATTGGCAGAATGTCACAGGGAGGGTATGGTGCATACAATGCTTATATATCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCCACTTTGTATGACCATCCTGGCTCAGTTTATGGAAGGGGTGAACCAGCTCGTGGAATGGGCAAAAAGATTTTTGTTGGCCGTCTTCCCCCTGAAGCAACAGCTGATGATCTTCGCCAGTATTTTGGCAGATTTGGCCGTATATTAGATGTTTATGTTCCTAAGGATCCTAAGAGAGCAGGCCATAGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTGGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCAGCCACACCTCTTGATGATGCAGGGCCCAGTGGGAATTTTATGATGAGTAGTGTGGATTCTTTTGGGGGATATGGCGGTCCTATGCGCACCTATGGGAGGATGTATGGTAGCCTGGACTTTGACGATTGGGGCTATGGAATTGGCAGTGGGAGACCATCAAGAGCAGATTGGAGGTATAGGCCATACTAG 1272 0.4552 MTRSIRFRHFGHRRFAKISDSILSRKPQTLKSQLQFQSVISQGGEWISPPAAVGSLLLHIVEASMEQRKLVVLGIPWEVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKNALSNEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASAESVENLMADTHELGGSTVVVDRATPKEDDFRPIGRMSQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPARGMGKKIFVGRLPPEATADDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPSGNFMMSSVDSFGGYGGPMRTYGRMYGSLDFDDWGYGIGSGRPSRADWRYRPY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0516 423 FunFam RNA-binding family protein isoform 1 285 368 - -
Dere13g0516 423 SUPERFAMILY RNA-binding domain, RBD 153 251 IPR035979 GO:0003676
Dere13g0516 423 FunFam heterogeneous nuclear ribonucleoprotein 1 148 240 - -
Dere13g0516 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Dere13g0516 423 Gene3D - 59 150 IPR012677 -
Dere13g0516 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 344 IPR000504 GO:0003723
Dere13g0516 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 224 IPR000504 GO:0003723
Dere13g0516 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 136 IPR000504 GO:0003723
Dere13g0516 423 Gene3D - 151 258 IPR012677 -
Dere13g0516 423 SUPERFAMILY RNA-binding domain, RBD 288 388 IPR035979 GO:0003676
Dere13g0516 423 SUPERFAMILY RNA-binding domain, RBD 58 149 IPR035979 GO:0003676
Dere13g0516 423 SMART rrm1_1 157 228 IPR000504 GO:0003723
Dere13g0516 423 SMART rrm1_1 69 140 IPR000504 GO:0003723
Dere13g0516 423 SMART rrm1_1 289 360 IPR000504 GO:0003723
Dere13g0516 423 Gene3D - 286 368 IPR012677 -
Dere13g0516 423 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 285 397 - -
Dere13g0516 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 364 IPR000504 GO:0003723
Dere13g0516 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 232 IPR000504 GO:0003723
Dere13g0516 423 FunFam heterogeneous nuclear ribonucleoprotein 1 66 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0516 Dere-ChrDere13 6515060 6523898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0516 69 357 Eukaryotic Initiation Factors Gene Family AT2G23350 26.510 2.54e-15 76.3