Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0513 ATGGACGTGGATGACACAAGCATGGATATGATGGCAATGATGATGCAGATGGAAAAGTTTCCTGAATTCTCTGAACCTTTTTACCCAGAACCCCACTTCTCCACCACTACCTCTACTCTGCCCATACTTCCCAATAGCTTGATGAATCCACAACCTTCCTTCGTTGCCAAGAATATTAATCCAATTCAACAACCCATGACACCACCACCTCTTCAACCCAAAGACGTTAGGGTCAGGAATACTACTCACCTTAATGCTTCTTCCTCATCGTTTCCCTACACAGCGTTTGAGAAGAAGAATTCTGTGGCGGCCATGAGAGAGATGATATTCCGAATAGCTGTGATGCAACCCATTCGCATAGACCCAGAATCCATCAAGCCTCCGAAGCGAAGGAACGTGAAGATATCGAAGGATCCGCAGAGTGTGGCGGCGAGGCACAGAAGGGAGAGAATAAGCGAGAGAATCAGAATTCTGCAGAGATTAGTTCCTGGAGGGACCAAAATGGACACGGCATCCATGTTGGACGAAGCTATACATTACGTTAAGTTCTTGAAGAAGCAGGTGCAGACGCTGGAACAAGCAGGGGCGAGTAGAGCAGTGGGTTTGGGGCTTCCAAGTGGAAGTGTAAATTATTCTACTTTGATGAAGGGTTACCACCAACCTTCGTACATGGGGGGTAGTTCTATGCAAATGCTTAGCTGA 702 0.4687 MDVDDTSMDMMAMMMQMEKFPEFSEPFYPEPHFSTTTSTLPILPNSLMNPQPSFVAKNINPIQQPMTPPPLQPKDVRVRNTTHLNASSSSFPYTAFEKKNSVAAMREMIFRIAVMQPIRIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRAVGLGLPSGSVNYSTLMKGYHQPSYMGGSSMQMLS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0513 233 Gene3D - 134 200 IPR036638 GO:0046983
Dere13g0513 233 Coils Coil 174 194 - -
Dere13g0513 233 Pfam Helix-loop-helix DNA-binding domain 145 184 IPR011598 GO:0046983
Dere13g0513 233 FunFam BHLH transcription factor 138 200 - -
Dere13g0513 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 194 IPR036638 GO:0046983
Dere13g0513 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Dere13g0513 233 SMART finulus 141 190 IPR011598 GO:0046983
Dere13g0513 233 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 46 214 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0513 Dere-ChrDere13 6446162 6446863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0513 1 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 54.673 3.38e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g0513 HLH 1.4e-06 No_clan