Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0509 ATGAATCATGTGATTGAGAAGATAATGCAAAGGATGAGGATTCAGCGCACACAAGGTGGTTCACTTATCATCTTCTCTTGCTTTCTCTCCTCTCTTACCAAAGCAACAACAATGGATTGGGTTCGAGGACACTCCGTTGGAAGAGGAAGCTTTGCCACCGTCCATTTAGTAATACCTACCAACGGTGCCTCTCAAGTTTATACTCCGACTGCTGTCAAATCATCGGAAGTTTCCAGCTCTTCTTCCCTCAAGAACGAGAAACGAGTGTTGGATTGCCTTGGGCTCTGCCCCCAAATTGTGCAGTGTTTCGGGGATGATTACAGCTTCGAGAATGGTGGGGAGTTTTACAATTTGTTTTTGGAGTACGCCGCGGGAGGTAGCCTTGCTGATCATGTCAAGAATCACGGCGGTCGGTTGCCGGAGTCCGAGGTCCGGCGGTACACGACGTCGATGGTGAAAGGGATCAGGCATATTCACGCGAAAGGCTATGTTCACTGCGATATCAAGCTTCAGAACATTCTTCTGTTTGACAATGGCGATGTCAAGATTGCAGACTTCGGGCTTGCGAAGAGAACAGAGGAGAAAGGGAAACAGAGCAGTGAAGAGAAGCAGAAGCAGAAGCAGTGCGAGTGGAGGGGAACTCCTCTGTTTATGTCACCGGAATCAGTAAAAGACAACGTGTACGACTCTCCGTCGGATATATGGTCTCTCGGCTGCGCCGTGGTGGAGATGGTGACCGGAAAACCCGTTTGGAACATCCAAAAGGGCTCGAAATCGAACAATATCTGCTCACTGTTGCTTCGGATTGGGGTAGGAGAAGAACTGCCAGAAATTCCCGACGAATTATCACAAGACGGGAAGGATTTTGTGAGGAAGTGTTTGGTGAAGGATCCTGCGAAGAGATGGACGGCAGAGATGCTTTTGAAGCACCCATTCCTAAAGCAGGACAACGAAGAATCGACGTCGCCGAGAAGTCTCTTCGATTTTCCAGATTGGGTTTCGAGCACGACGGCTTCGGCTCCGCATTCGCCGGAATCCGACGAATGGAGCGAATGGAAATTTGATGCGTCGTCGTGTGCTTCGAGTTTCTGTTGGCCGGCGGATCGTCTCCGGCAAGTTGTTACAGATGAGAGACCCGATTGGTGGAAATCAGAATCCGAAAGTTGGGTTAGTGTTAGGTAA 1182 0.4949 MNHVIEKIMQRMRIQRTQGGSLIIFSCFLSSLTKATTMDWVRGHSVGRGSFATVHLVIPTNGASQVYTPTAVKSSEVSSSSSLKNEKRVLDCLGLCPQIVQCFGDDYSFENGGEFYNLFLEYAAGGSLADHVKNHGGRLPESEVRRYTTSMVKGIRHIHAKGYVHCDIKLQNILLFDNGDVKIADFGLAKRTEEKGKQSSEEKQKQKQCEWRGTPLFMSPESVKDNVYDSPSDIWSLGCAVVEMVTGKPVWNIQKGSKSNNICSLLLRIGVGEELPEIPDELSQDGKDFVRKCLVKDPAKRWTAEMLLKHPFLKQDNEESTSPRSLFDFPDWVSSTTASAPHSPESDEWSEWKFDASSCASSFCWPADRLRQVVTDERPDWWKSESESWVSVR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0509 393 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Dere13g0509 393 CDD STKc_MAPKKK 39 313 - -
Dere13g0509 393 SUPERFAMILY Protein kinase-like (PK-like) 35 346 IPR011009 -
Dere13g0509 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Dere13g0509 393 Pfam Protein kinase domain 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0509 393 Gene3D Transferase(Phosphotransferase) domain 1 33 355 - -
Dere13g0509 393 ProSitePatterns Protein kinases ATP-binding region signature. 46 73 IPR017441 GO:0005524
Dere13g0509 393 SMART serkin_6 40 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0509 393 ProSiteProfiles Protein kinase domain profile. 40 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0509 393 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 32 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0509 Dere-ChrDere13 6427339 6431359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0509 38 393 MAP Kinase Kinase Kinase AT4G36950 49.725 6.81e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Dere13g0509 Pkinase 6.6e-57 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0732 09 10145914 10146972 Dere13g0509 13 6427339 6431359 CCT
Dere13g0509 13 6427339 6431359 Dere13g0509 13 6427339 6431359 ECH