Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0504 ATGGCGAATCATCAAGGAGGGATGGGTCAATTGAATTGTGATGCAAACAACCAAAACAAGGTCAATCATCAAACAGTTGGAGCATTGGGATTGCTATCTTCTGCAAGTTCCCTTACTGGAGGTGATCAAAGGTTCCTAGATGGGGTTTCAGGGTCAAATCATCTCTCTTATAAAGAGAGTAGTAATATTGTTCCAAATAATGATCACAGTACTGCCGTTTTTCCTCATGAATCATCTGGAGCATGGGGGCTTTCTTCTTTAAGTTCCCTTTCTGGAAATGTTCAAAGGTTCCCAGATAGGTTTCCTGGACCAAGTGGTCTCCATTATCAAGGAAGTAATAATATTGTTCCAAGTGATGGTCAAGGGGTTGGTGTTGTTCCTCATAATATAGACTCGGATGCAGAACATGCAGGGAACAATTTTTACAACAATCTGAATATGTCAGTAGGTTTATGCCTTCATCCATATGGACCAGAAAATCAGAATACCAGCAACTCTTATACAACTATAGTTGACAGTGGAGTACCAAGAGACATAGTGCAAGAGCAAGGTCTGGATAGCGGCTCAGTGGATATGAGGCGTTTATCCTGCAAGAGAAGATCTCCTGAACATAGTGTTGGAGAATTGTTGATAGGTGAGAGTTCTAGCATGGCTTCACAAGCTGGAGTTTCCAAACGTCGGGCTGCTGAAGTCAATACTAATAACATCTTATCCACTCCTTGTTCTGATCCTGAAAGTCATCGAGAACAATTTGAGACCAGAATTGATCAGAGTACTATAAGGCTGGTTTCTGACATGCAACACTTGAGTGAAGCTAGACAATCTCAAAGCTTCCAAAGTAATGTTCATCTTCATACAGCTGCTAATGAACAAGCTTTTCTTCCACCCAGCATATTGTCATCTGGGTACAGGAGAGACGCTTGTGTTCAGTTACCCCATCAGCCATCTTCCTTCAGGTCTGCAGAAACTCCAGCTGGTGTAATGTCCTCAGTGCAGACAGTGGAGCATGTTCCTAATTTTCATGAAACTCTACTGGTTCCCCGGGTTAACATGATGAACCCAAGTAGATTTTCTCCTTCATTTTTGCCTGTCTATACTGCAGGGGGTAGTAGGCTTGTGGCACCCTCTCATTACCCAAGAAACATACCTGGAAATGTCATGCTTGGCCCTCAAATTGGGTGGGGAAATCGGGTACATTATGCAGGAAACTTGAGTTCTGTCAATAGAACTGCAAACTTCCGCAGAGACTTTGCCTATCCTTCTCACCACCTTTCTGTTTCTGGTATTCATCCATCAAATGCCCCTACAAGGGTCCCGGGGTTCAACTTTGCTGAACATTATGTGCAGACAACATCAGGAATTATGAATCATCATGTGGTCGCATCTACTGGTTTCCCAAGGCAAAGTAGTCAAAGCCCATCAGATTTAGATCCTTCAGCAGTCTCACAGGAAATGGACTTGTCTATTCGATTTGGTAATTCTATATCTCAGAATCATAATACATCAGAAGTAAGATCTGAGAGTCAGGCTGTTAGGACTTTACGGCCACCTGCTAATGTTCATAATAGAATCAGATCTGAGAGTCAGGCTGCTATGGATTTATGGTCACCTGCTAATGATCATAATAGAATGAGGATCAGAAATGAGCTTCTCGCTGGATTAGCGCATCTGCGCAGCGGTGGCTCCTTGCGTTATGAGGATTTGATGATGCTTGACCATTCACTTATATTACATTTGCTTGAGGCACATATTCGTGCAGATGCAGAGCATCATGACGCAGAGCACATGGCATATGAGGAACTCGTTGCCCTAGAAGAACAAATTGGCAATGTGAGCACTGGGTTAAATGAGGAAGCTATTCTTAGCCACCTTAGGCAGGAAAAATTTCAGCCCATACCAGAGGAGTCTCTGGAAAATGAATCCTGCTGCATATGTCAGGAGGAGTACCTTGAATATGAAGATCTGGGTAAGCTGGACTGCGGCCACAGATTTCACGTTGACTGCATCAAGCCATGGCTATTGCTGAAGAACACCTGCCCCATTTGCAAACAAATTGGACTAGCCGTCACTCATCGTGATCCTTAA 2085 0.4341 MANHQGGMGQLNCDANNQNKVNHQTVGALGLLSSASSLTGGDQRFLDGVSGSNHLSYKESSNIVPNNDHSTAVFPHESSGAWGLSSLSSLSGNVQRFPDRFPGPSGLHYQGSNNIVPSDGQGVGVVPHNIDSDAEHAGNNFYNNLNMSVGLCLHPYGPENQNTSNSYTTIVDSGVPRDIVQEQGLDSGSVDMRRLSCKRRSPEHSVGELLIGESSSMASQAGVSKRRAAEVNTNNILSTPCSDPESHREQFETRIDQSTIRLVSDMQHLSEARQSQSFQSNVHLHTAANEQAFLPPSILSSGYRRDACVQLPHQPSSFRSAETPAGVMSSVQTVEHVPNFHETLLVPRVNMMNPSRFSPSFLPVYTAGGSRLVAPSHYPRNIPGNVMLGPQIGWGNRVHYAGNLSSVNRTANFRRDFAYPSHHLSVSGIHPSNAPTRVPGFNFAEHYVQTTSGIMNHHVVASTGFPRQSSQSPSDLDPSAVSQEMDLSIRFGNSISQNHNTSEVRSESQAVRTLRPPANVHNRIRSESQAAMDLWSPANDHNRMRIRNELLAGLAHLRSGGSLRYEDLMMLDHSLILHLLEAHIRADAEHHDAEHMAYEELVALEEQIGNVSTGLNEEAILSHLRQEKFQPIPEESLENESCCICQEEYLEYEDLGKLDCGHRFHVDCIKPWLLLKNTCPICKQIGLAVTHRDP 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0504 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Dere13g0504 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 147 685 IPR045191 GO:0061630
Dere13g0504 694 SMART ring_2 642 682 IPR001841 -
Dere13g0504 694 SUPERFAMILY RING/U-box 633 685 - -
Dere13g0504 694 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Dere13g0504 694 Pfam Ring finger domain 641 683 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0504 Dere-ChrDere13 6386472 6390512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0504 538 689 C3H Transcription Factor Family AT2G15530 44.872 2.74e-36 144