Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0497 ATGTGGGATCTTAACGACTCGCCCGATCAGAGAAACGACGACGAATCGGAAGGCTGTTCTTCTTCCCTGAATGAAGATAAAGGGAAGCGGGTCGGATCTGTTTCGAATTCAAGCTCATCGGCGGTGGTAGTCGAAGACGGATCCGCGGAAGAAGACGGCGAGGGAAGCAGAGGAATATTGAAGAAGAAGCGAAGCAGTAAGATATTCGGGTTCTGTGTGACACATGAAGACTCCATGGATAGTACTGATGCGGACGACCCACCCACAATTGCTACCAGGCAGTTTATGCCGGTGGAGGGGGCTGACGTGGCCGGCGGTACCAGCTCAGCCTTCCCTCGGGCGCACTGGGTGGGCCTAAAATTCTGTCAATCAGAAGCAGTTGGTGGTGGAAAACCTGTGGAAGTAGTGTCGTCGCAGCCCATGATGAAGAAGAGTCGGCGAGGCCCAAGGTCGAGGAGTTCACAGTATAGAGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCACATATGGGATTGTGGAAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATACGATAGAGCGGCCATTAAGTTCCGGGGGGTAGAAGCAGACATAAACTTCAACATAGAGGATTATGAAGAGGACTTGAAACAGATGGGCAATTTGACGAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTCTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTCTTAGGCAAAAAGTACGTTTATCTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCACTAAAATGTAACGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATAATGAGCTTAATTCTGCATCAGAATCCTCAGGTAATGCTGATCACAATTTGGATTTGAGTCTGGGTAATTCGAGCTCGAAACACAGCGGTAGGCAAGCATTGCTCAATCTGGTACCAGAAAATAGAAGTAACACGGAATCTTATGGAAGAAATGGGCACAGCGAGAGTGAAGCTTTGCGTCTGCTAAGTCAAACTCACCTTCAATCTCCAGCCACTGAAGAAACCCAAAGATATGGTCCCTACAGGACTTCTGGAGAGCCTCAAATTCTTCCCAATTTTGCACATTTTCACCAGTCAAATTTTCGTCTTCCTAGCAGCAGTAATGGAAACGGGGGTCGTTTTGGAAGTGATCTTTCACTGTCAATGAACGATCAAGAACGATGGCTATCTGGACCTCCTCAACTTTTAACTTCTGCTGCAGCATCATCAGGATTCCCACAGCAGATAAGAACCTCCCAAGCTTGGCTGCAGAAAAATGGGTTCCACAGTACTCTCATGAGACCCTCCTGA 1437 0.4816 MWDLNDSPDQRNDDESEGCSSSLNEDKGKRVGSVSNSSSSAVVVEDGSAEEDGEGSRGILKKKRSSKIFGFCVTHEDSMDSTDADDPPTIATRQFMPVEGADVAGGTSSAFPRAHWVGLKFCQSEAVGGGKPVEVVSSQPMMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAALKCNGKEAVTNFDPSIYDNELNSASESSGNADHNLDLSLGNSSSKHSGRQALLNLVPENRSNTESYGRNGHSESEALRLLSQTHLQSPATEETQRYGPYRTSGEPQILPNFAHFHQSNFRLPSSSNGNGGRFGSDLSLSMNDQERWLSGPPQLLTSAAASSGFPQQIRTSQAWLQKNGFHSTLMRPS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0497 478 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 MobiDBLite consensus disorder prediction 1 59 - -
Dere13g0497 478 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 SMART rav1_2 155 217 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 CDD AP2 155 212 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 MobiDBLite consensus disorder prediction 1 24 - -
Dere13g0497 478 SUPERFAMILY DNA-binding domain 246 306 IPR016177 GO:0003677
Dere13g0497 478 FunFam AP2-like ethylene-responsive transcription factor 154 213 - -
Dere13g0497 478 MobiDBLite consensus disorder prediction 26 44 - -
Dere13g0497 478 MobiDBLite consensus disorder prediction 312 340 - -
Dere13g0497 478 FunFam AP2-like ethylene-responsive transcription factor 246 306 - -
Dere13g0497 478 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Dere13g0497 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 379 - -
Dere13g0497 478 Pfam AP2 domain 246 295 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Dere13g0497 478 Gene3D AP2/ERF domain 154 213 IPR036955 GO:0003700|GO:0006355
Dere13g0497 478 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Dere13g0497 478 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0497 Dere-ChrDere13 6302287 6304976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0497 1 478 AP2-EREBP Transcription Factor Family AT4G36920 56.773 1.78e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere13g0497 AP2 2.2e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0708 09 9780205 9782785 Dere13g0497 13 6302287 6304976 CCT
Dere13g0497 13 6302287 6304976 Dere13g0497 13 6302287 6304976 ECH