Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0495 ATGGAAGGCGAAGGAGGAGAGAGAGAGCTAGGCACAAGGAAGAGAGGGGTAGAAGGAGAGAGAAGGTACAAGGGGATTCGGATGAGGAAGTGGGGTAAGTGGGTCGCTGAAATTAGGGAACCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTATTCCACCCCGGTGGCGGCAGCTCGAGCCTACGACACGGCCGTTTTCTATCTCAGAGGACCATCCGCTCGCCTTAATTTCCCGGAGCTTCTGGCCGCAGAAGGGTGCGGCGGTGGCGGAGACTTGTCAGCGGCCTCGATTCGGAAGAAAGCCACGGAGGTAGGTGCTAGAGTGGACGCCCTTCAAGCTGCTCTGCACCACCATCATCACCACCGCCATGCGTCAGCGGAGGCAGCGGAGCTCATGCCACGTGGCGCCGGAGACTTTGTGGAGCGGGTTGACCTTAATAAGATACCTGAACCCGAGAATTCGGAGTGTGCCTGA 477 0.5807 MEGEGGERELGTRKRGVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAAEGCGGGGDLSAASIRKKATEVGARVDALQAALHHHHHHRHASAEAAELMPRGAGDFVERVDLNKIPEPENSECA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0495 158 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Dere13g0495 158 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Dere13g0495 158 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Dere13g0495 158 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Dere13g0495 158 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Dere13g0495 158 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Dere13g0495 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 156 - -
Dere13g0495 158 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Dere13g0495 158 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Dere13g0495 158 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0495 Dere-ChrDere13 6269309 6269785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0495 10 156 AP2-EREBP Transcription Factor Family AT2G23340 65.789 1.04e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g0495 AP2 9.9e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0706 09 9760450 9760947 Dere13g0495 13 6269309 6269785 CCT
Dere13g0495 13 6269309 6269785 Dere13g0495 13 6269309 6269785 ECH