Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0493 ATGCCTCTATTGGTAAGTGATTCTGTCAAGGGCATTGAGAAGACGAAGAATGCGATCAAAGTTTTGAAGCAGATCGGTGCGTTCCCAGATGCTAAAAAGACGAAGGACAGTCACGCGATTCGGCCTGGAAAGGGTAAGATGAGAAATCATCAGTATGTTTCTCGTAAGGGTCCTCTGATTGTTTATGGAACTGAAGCACCTAAAGTAATTAAGGCCTTCAGGAGTATACCATGTGTTGAGGTTGCGAATGTGGAGAGATTGAATTTGCTTAAGCTAGCACCTGGTGGTCATCTTAGGAGTGAGGACTACCCTAGTAAGCCTCCAAAGTGTAAATTTCAGCAAGGTTTCTTCCACTCAAATGCCTACCCATCTAGAACAATCTACCTGTCTATACTTAATGAGGACAGTGGGTGGAGACCAGCGATAACTGTGAAGCAAATTCTTGTTGGCATCCAAGACTTACTTGACCAGCCAAATCCTGCTGATCCTGCCCGGACCGAGGGCTATCATCTCTTCATCCAGGATTTGGTGTTGAGAAGTGGTTATCCATGA 552 0.4493 MPLLVSDSVKGIEKTKNAIKVLKQIGAFPDAKKTKDSHAIRPGKGKMRNHQYVSRKGPLIVYGTEAPKVIKAFRSIPCVEVANVERLNLLKLAPGGHLRSEDYPSKPPKCKFQQGFFHSNAYPSRTIYLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPARTEGYHLFIQDLVLRSGYP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0493 183 SUPERFAMILY Ribosomal protein L4 1 97 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere13g0493 183 SMART ubc_7 57 182 - -
Dere13g0493 183 Gene3D - 1 99 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere13g0493 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 16 183 IPR000608 -
Dere13g0493 183 SUPERFAMILY UBC-like 100 176 IPR016135 -
Dere13g0493 183 Gene3D Ubiquitin Conjugating Enzyme 100 178 IPR016135 -
Dere13g0493 183 Pfam Ubiquitin-conjugating enzyme 101 174 IPR000608 -
Dere13g0493 183 Pfam Ribosomal protein L4/L1 family 6 98 IPR002136 GO:0003735|GO:0005840|GO:0006412
Dere13g0493 183 PANTHER 60S RIBOSOMAL PROTEIN L4 1 98 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0493 Dere-ChrDere13 6236893 6239907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0493 1 98 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 71.429 1.26e-44 150