Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0478 ATGGAACCAGCATCTGCCGATTCATCATCTCAACCTCCCAATTCAGCTAGTAATAGTGAACATCATTCCCCCAATGTCTCTGGGCAAAATGAGAATGCCCATGACTCTGCGCCCTCGTTATCTGCTTCTGACAAATCATCCTGGGAGAGGAATCTGAAATTTTCACAGTCCTTTGGAGCAAGACAAGAAGAGAACTTGCAGACCGGAGTTTCTGGAATGTCAAATTTTTCTCGCCTGACCAGTGGGCTTGGACGAATGCTCTCGATGCCTTCAGTTCGAAATGAGACTACTCCAGTCAATTCGGGAGCTGAGAAACCTAGTTTAATTGAATCATTTACCAAAGGGTTTGTTGACTCATCTAAAACTGCAGTAAAGAAGATGCAGGTCAAGGCACGTCATATTGTCTCTCAAAACAAACGTAGATACCAGGATGGAGAGTTTGATTTGGATATGGCATACATTACTGAAAATATAATTGCTATGGGATTCCCAGCTGGTGACTCCAGCTCTGGAGTTTTTGGATATATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTCATCAGATTTTTTGAGACTCATCATGAGGGGAAGTACAAAGTATACAATCTCTGTTCAGAGAGGTTGTATGATGCATCGTTATTCAAAGGGAAGGCTGCAAGTTTCCCATTTGATGATCATAATTGCCCTCCTATTGAACTTATAGCATCATTTTGTAAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTACATTGTAAAGCTGGTATGGGGAGGACAGGAGTGATGATTTGTAGCCTTCTTTTGTTTCTCAAGTTCTTCCCAACTGCTGAGGAAGCCATTAATTGCTTTAACCAAAAAAGATGCATCGATGGGAAAGCCCTGGTTCTGCCTAGTCAGATTAGGTATGTCAAATACTTTGAACGGACTTTTACATACTTCAAAGGAGAAGTTCAGCCTGGACGAAGGTGCATGCTAAGAGGTTTTCGGCTCCATAAATGCCCGTATTGGATTAGGCCATCCATTACAATTTCTGATCATAATGGAATTCTTTTCTCCACAAAAAAGCATCCAAAAACAAAGGATCTAATGCCAGAAGATTTTTGGATCAGTGCACCAAAGAAGGGAATTCTGGTCTTTGCATTACCAGGGGAGCCTGGTCTGACTGAGTTGGCTGGGGACTTCAAAATTTATTTTCATGATCGAAACGGAGATTTCTACTGTTGGTTAAACACAACAATGACAGAAAACAGAAAAATTTTAGATGCCTCAGATCTTGATGGTTTTGACAAGAGAAAAATCCCAGCTCCTGGGTTCCAGGTCGAAGTAGTGATGGTAGACTATGACGGTACCCTACCTGCAAGAACAAAAGCCAATCCCTCCGGCGAAGGATCTGGTGGTAACACAGGCAATGTCTCAGGCTCAGATGCGAGGGTTGCTTCTAATTCAAGTAAGAGTAACGTCCCTACAAATGGAGATGATGATGTATTCTCAGATAGTGAAGGAGAGGAAACCCGGGATTCAGAGAGCAAGAAAGCTAAAGGTGCATCTGAATCCAGATTTGGGGAACGTCATCAAGTATCTGATGCCACCACCGACCATGTTGGGGTCTTGACCAGGGAAGCAAATCAGCTGTCACTCCAGCACGAGGAACGTACACAAAATAATGCTTCTGAAGGATCAACTACTTCCAAAACTCAGAAAACCCCCAAGAGCCCTAGAAGGGAGTATGATGGGGCAAATGACATCAAGGCCATAGCAGCTGATGCTTCAGTATTTTCTTTTGGAGATGAAGAAGATTTTGAAAGTGACTGA 1830 0.4273 MEPASADSSSQPPNSASNSEHHSPNVSGQNENAHDSAPSLSASDKSSWERNLKFSQSFGARQEENLQTGVSGMSNFSRLTSGLGRMLSMPSVRNETTPVNSGAEKPSLIESFTKGFVDSSKTAVKKMQVKARHIVSQNKRRYQDGEFDLDMAYITENIIAMGFPAGDSSSGVFGYIEGFYRNHMEEVIRFFETHHEGKYKVYNLCSERLYDASLFKGKAASFPFDDHNCPPIELIASFCKSAYSWLKEDIQNVVVVHCKAGMGRTGVMICSLLLFLKFFPTAEEAINCFNQKRCIDGKALVLPSQIRYVKYFERTFTYFKGEVQPGRRCMLRGFRLHKCPYWIRPSITISDHNGILFSTKKHPKTKDLMPEDFWISAPKKGILVFALPGEPGLTELAGDFKIYFHDRNGDFYCWLNTTMTENRKILDASDLDGFDKRKIPAPGFQVEVVMVDYDGTLPARTKANPSGEGSGGNTGNVSGSDARVASNSSKSNVPTNGDDDVFSDSEGEETRDSESKKAKGASESRFGERHQVSDATTDHVGVLTREANQLSLQHEERTQNNASEGSTTSKTQKTPKSPRREYDGANDIKAIAADASVFSFGDEEDFESD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0478 609 CDD PTP_PTEN 150 314 IPR045101 GO:0016791
Dere13g0478 609 ProSitePatterns Tyrosine specific protein phosphatases active site. 256 266 IPR016130 GO:0016311|GO:0016791
Dere13g0478 609 MobiDBLite consensus disorder prediction 466 499 - -
Dere13g0478 609 ProSiteProfiles C2 tensin-type domain profile. 326 453 IPR014020 -
Dere13g0478 609 MobiDBLite consensus disorder prediction 508 535 - -
Dere13g0478 609 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 254 293 IPR000387 GO:0016311|GO:0016791
Dere13g0478 609 Gene3D Protein tyrosine phosphatase superfamily 125 322 IPR029021 -
Dere13g0478 609 ProSiteProfiles Phosphatase tensin-type domain profile. 140 319 IPR029023 -
Dere13g0478 609 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 153 320 IPR029021 -
Dere13g0478 609 MobiDBLite consensus disorder prediction 459 585 - -
Dere13g0478 609 MobiDBLite consensus disorder prediction 542 573 - -
Dere13g0478 609 MobiDBLite consensus disorder prediction 1 48 - -
Dere13g0478 609 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 117 574 - -
Dere13g0478 609 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 125 322 - -
Dere13g0478 609 SMART PTEN_C2_2 324 452 IPR014020 -
Dere13g0478 609 Pfam Protein-tyrosine phosphatase 227 278 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0478 Dere-ChrDere13 6118628 6125361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0478 3 609 Protein tyrosine phosphatase (PTP) family AT3G19420 59.774 0.0 730