Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0477 ATGCCCACGAAACAGTCCCTGAACCTAAAGAGCTTCTCTCTGGGTCAATTGGGCGTCCGTAAGGAGTTACCAACAGCCAAGCGCAGCCTTGCTCCCTCGCTTGCGATTTCCCTCTTTCTCTCTGCTTCTTTAGGGTATTTGGTATCGGAATTTGCAACAACCACAATGGAGGAGAAGATAGACACTGCAGAGAAACAAGTGCTGGTTGACATTGTAAAATTGGTACAAAAAAGAGGAATGAAGGGTACACTGGGAGACTGGAAAGAATTCTTAAACAGTCATGATAAAAAGTTTGGGGCTAATTTGAGTGATCCAGCAAGGAGGTCCCATGAGGTATTGGCTGCATTTTTAAAGACATTTTCAAAGGATGATGATTTAAAGTTTCTTGATAACATCATGCGACGCCATTCAAATCAGGACTTGTTGGAGCAACTAAAACATAAATCTCATGATTCCCCTGAGCAGAGGCTTGTCCAAAAAACTCTGCAGCACGCATTGTATCCATTGGATTATACATTTGCAGAACTTGATGAGGACTGGGTGGTTATAAACCTTAGGAAAAAAAACAAGTTACTGAGATCTACTGAGATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTTGACCGCAATTTGGAGGTGAAACTAAATAAACTTGTGCGCCCCAACAAAGCAATTACAGACTACAGAACAGAGATAACTGGTATCTCTTCTCAAGATCTAGAGGGAGTTACTTGCTCATTGGCTGATATACAGAAATCCTTGAGGAAGCTTTTATCAAATGGAACAATATTAGTGGGACACAGTTTACATAATGATCTACACGTGCTGAAGCTAGATTATGTTAGAGTAATTGACACTTCATATATCTTCCAATGCTCGGATGGCCCTATTCACAAGAGACCTTCTCTGAATAGTTTATGTAAGGCTGTGTTAGGTTATGAAGTTCGGACAATGGGTGCTCCACATAATTGTTTAGATGATGCAAGTGCAGCAATGAAGCTTGTTCATGCTAAGATAAAGCATGGTGTTGATAATGCAATTCCCTTGGTTCAAGTACATGTTGTCGAAAGTGAGATGTCAAAGCTGCTTCTTCACAGGATACCAGTTAGTGTTAAGAGCGAAGAACTACATAAAGCTGTTCCTGGAGACTTCACATTGGAACCGAAGCTGTCTAAAGGAGGAAAATATTCTGCCTTGGCCATCTTCAAAAATCCACAAGTGGCCCATGAGGCATTTGATAATGTCCAAGGCAGCCAAGAAAAGGATTCATCTGGACTTCCACAGAAACTTGTCACATTCCAGCTCAGTACAGGTATGACTACCAGTGTATACGTTCGGAAAATGGCACCTGACGGTGCCCATGACGTGATTCCATCTAAGAGAGCTTTGGAAGTGAATGAGACACCTGCTTCCAAGAAAGCAAAGATGGATCCTGAAATAGAAGAGAATGCCGTGACTGGCTCAAATATGTGTGACACTCACTTGAGTGAGATCGAAGCCCTAAATCAACGACTGAAACAAAGTGATTTGGAGATTGAATCGCTCAGGCAACAGTTGAAGCAGAAGGATTTTGAAATCTCTGTGTTGAATAAAATGGTATCCACCTTGAAAAAGAACTCAAATAGATGA 1668 0.4155 MPTKQSLNLKSFSLGQLGVRKELPTAKRSLAPSLAISLFLSASLGYLVSEFATTTMEEKIDTAEKQVLVDIVKLVQKRGMKGTLGDWKEFLNSHDKKFGANLSDPARRSHEVLAAFLKTFSKDDDLKFLDNIMRRHSNQDLLEQLKHKSHDSPEQRLVQKTLQHALYPLDYTFAELDEDWVVINLRKKNKLLRSTEMVAVDCEMVLCEDGTEAVVKVCVVDRNLEVKLNKLVRPNKAITDYRTEITGISSQDLEGVTCSLADIQKSLRKLLSNGTILVGHSLHNDLHVLKLDYVRVIDTSYIFQCSDGPIHKRPSLNSLCKAVLGYEVRTMGAPHNCLDDASAAMKLVHAKIKHGVDNAIPLVQVHVVESEMSKLLLHRIPVSVKSEELHKAVPGDFTLEPKLSKGGKYSALAIFKNPQVAHEAFDNVQGSQEKDSSGLPQKLVTFQLSTGMTTSVYVRKMAPDGAHDVIPSKRALEVNETPASKKAKMDPEIEENAVTGSNMCDTHLSEIEALNQRLKQSDLEIESLRQQLKQKDFEISVLNKMVSTLKKNSNR 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0477 555 Pfam Exonuclease 198 347 IPR013520 -
Dere13g0477 555 Coils Coil 504 538 - -
Dere13g0477 555 SMART exoiiiendus 196 357 IPR013520 -
Dere13g0477 555 SUPERFAMILY Ribonuclease H-like 197 352 IPR012337 -
Dere13g0477 555 FunFam Small RNA degrading nuclease 3 192 366 - -
Dere13g0477 555 Gene3D - 192 369 IPR036397 GO:0003676
Dere13g0477 555 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 65 361 IPR047021 GO:0004527
Dere13g0477 555 CDD REX1_like 198 348 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0477 Dere-ChrDere13 6110265 6115936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0477 198 347 C2H2 Transcription Factor Family AT2G48100 32.164 3.01e-12 66.2