Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0474 ATGGCTCTCACAGAAGAAACTCTAGATGTGCAAAACCCATTGTTCTTAGATGCGCTTCTCTGTGAGGAAGATAGTATTGAGGAAGGCTTTACAGAGGATGGTACTGAAGGAGAGAGTTATAGGAAAAAGTCGTCATCTTTGCCTTTCATTTTGTTGGAAAATGATCTTTTCTGGGAAGACGATGAGCTCGTCTTTCTAATCTCAAAAGAGGGAGGGACCCATTTCTGTTTCAGTAATCTTGTCACCGATGGCCCTCTAAAGGAAGCTCGCGAGGAGGCTGTATTCTGGATTTCTAAAGTTTGTGCCCACTATAACTTCTCTGCTCTGACCACTGTTCTTGCTGTGAACTACTTTGATCGATTCATCACAAATCTAAAATTTCAGCGAGATAAGCCATGGATGACACAGCTCGCTGCTGTTGCTTGTTTGTCTCTGGCTGCTAAAATGGAGGAGACCCAAGTTCCACTTCTCTTGGACCTTCAAGTCGAGGAATCGAAGTATGTGTTTGAAGCAAAAACTATACAGAGAATGGAGCTTCTAGTGTTATCAACTCTTCAATGGAGGATGAATCCTGTGACTCCAATCTCCTTCTTTGAACACATTGTGAGAAGGCTCGGTTTGAAGAATCGCTTGCATTGGGAACTCCTCTGGCGATGCGAACGTGTTCTTCTGTTTGTCATCGGGGATTCAAAGGTTATGAGTTATCTTCCTTCTACAATAGCTGCTGCTACAATTATCCACGTTATTACGGAGATTGAACCATTTAATGCAATGGAATACAGAAACCAGCTTCTGGGTTTACTCAAAATCAGCGAGGAACAAGTGAACCAGTGCTATAGACTTGTTCTGAAAGTCCTATGTTCTCATGAAGACATTCAAAATCTTCATGGCAAGCGCAAACGCCTATCTGAACCGAGAAGCCCTGATGGAGTCATTGATGCTTACTTTAGCTATGAGAGTTCAAATGATTCGTGGGCCGTAGGATCAGTCTCAGTTTCAGCGGAGCCAATGTTTAAGAAGAGTCGATCTCAGGAGCAGCCTATGCAATTGCCTTCTCTGAATCGCGTGTCTATTGATGTTCTTAATGCTCCTCGTTAA 1098 0.4308 MALTEETLDVQNPLFLDALLCEEDSIEEGFTEDGTEGESYRKKSSSLPFILLENDLFWEDDELVFLISKEGGTHFCFSNLVTDGPLKEAREEAVFWISKVCAHYNFSALTTVLAVNYFDRFITNLKFQRDKPWMTQLAAVACLSLAAKMEETQVPLLLDLQVEESKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFEHIVRRLGLKNRLHWELLWRCERVLLFVIGDSKVMSYLPSTIAAATIIHVITEIEPFNAMEYRNQLLGLLKISEEQVNQCYRLVLKVLCSHEDIQNLHGKRKRLSEPRSPDGVIDAYFSYESSNDSWAVGSVSVSAEPMFKKSRSQEQPMQLPSLNRVSIDVLNAPR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0474 365 CDD CYCLIN_AtCycD-like_rpt1 89 187 - -
Dere13g0474 365 SMART Cyclin_C_2 192 323 IPR004367 -
Dere13g0474 365 CDD CYCLIN_AtCycD-like_rpt2 192 282 - -
Dere13g0474 365 FunFam CYCLIN D32 191 280 - -
Dere13g0474 365 SUPERFAMILY Cyclin-like 174 293 IPR036915 -
Dere13g0474 365 SMART cyclin_7 95 183 IPR013763 -
Dere13g0474 365 Pfam Cyclin, C-terminal domain 192 290 IPR004367 -
Dere13g0474 365 FunFam D3-type cyclin 83 190 - -
Dere13g0474 365 Gene3D - 87 190 - -
Dere13g0474 365 Pfam Cyclin, N-terminal domain 88 190 IPR006671 -
Dere13g0474 365 SUPERFAMILY Cyclin-like 57 190 IPR036915 -
Dere13g0474 365 PANTHER CYCLINS 65 284 IPR039361 -
Dere13g0474 365 Gene3D - 191 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0474 Dere-ChrDere13 6088475 6089830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0474 1 355 Core Cell Cycle Gene Families AT5G67260 49.730 2.38e-108 321
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0474 13 6088475 6089830 Dere09g0693 09 9675982 9677434 CCT
Dere09g0693 09 9675982 9677434 Dere13g0474 13 6088475 6089830 ECH
Dere05g1660 05 26297360 26298724 Dere13g0474 13 6088475 6089830 ECH
Dere13g0474 13 6088475 6089830 Dere13g0474 13 6088475 6089830 ECH