Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0471 ATGAACATGGCCGTTGATAGCAGAAAGGACATGGATCGGATCAAGGGCCCGTGGAGCCCCGAAGAGGACGAGGCGTTGCAGAAGCTGGTTGAGAAGCACGGACCTAGGAATTGGTCTTTGATCAGCAAGTCCATTCCGGGCCGTTCCGGCAAGTCTTGCCGGCTTCGCTGGTGTAATCAGCTTTCTCCTCAGGTGGAGCACCGAGCCTTCACGACGGAAGAGGATGAGACTATTATTCGGGCTCATGCCCGATTCGGCAATAAATGGGCCACGATAGCCCGGCTACTCTCGGGTCGAACCGACAACGCCATCAAGAACCATTGGAACTCCACCTTGAAACGCAAGTGCGCATCGATGATGGTCGATGAAGCTGGCGCCGGTGGATTTGACGGCAGTTTCAGCCCCCAGCCGCTGAAAAGATCGGTGAGTGCCGGAGCTGCCATGCCGGCTTGCACCGGTTTTTACGGCGACCCGCCGACACCCGGCAGCCCGTCTGGATCCGACATCAGCGATTCCAGTGCGCCCGTTGCATCTTCTTCCCATGTTTACCGGCCTGTGGCGAGAACTGGCGGAGTTCTACCTCCCGTAGAAACGACGTCGTCATCGAATGACCCTCCCACTTCATTATCCCTGTCTCTTCCTGGTGTGGACTCATCAGAAGTCTCCAATCGTGCTTCAGAGTCTACACGCGCAGCTCCTCCGGCAAATACTTTGCATTTGTTACCGGTAATGGCTTTGGCCCCGGGATCCTCGGCTGCGCGGCCGCCGGCTCCAGGAGCTGTCGCGATGTCGGTGCAGCAGCAGGCTCATTTTGGTCGAGGTGATCGGAGGACCGGCGACGGTTGTTCATCTGCGGCGAATTTGAATGGGTTCGCGCCATTCAATTTCAGCGCAGAGTTGCTAGCTGTGATGCAGGAGATGATAAGAACGGAGGTGAGAAGTTATATGGCGGGATTGGAGCAGAGGCAGCTGATGGATTTAGGAACATTCCAGTGA 996 0.5663 MNMAVDSRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTTEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMVDEAGAGGFDGSFSPQPLKRSVSAGAAMPACTGFYGDPPTPGSPSGSDISDSSAPVASSSHVYRPVARTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRASESTRAAPPANTLHLLPVMALAPGSSAARPPAPGAVAMSVQQQAHFGRGDRRTGDGCSSAANLNGFAPFNFSAELLAVMQEMIRTEVRSYMAGLEQRQLMDLGTFQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0471 331 CDD SANT 69 112 IPR001005 -
Dere13g0471 331 PANTHER MYB PROTEIN-RELATED 15 214 - -
Dere13g0471 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Dere13g0471 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Dere13g0471 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dere13g0471 331 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Dere13g0471 331 MobiDBLite consensus disorder prediction 1 21 - -
Dere13g0471 331 Gene3D - 14 66 - -
Dere13g0471 331 Gene3D - 68 124 - -
Dere13g0471 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere13g0471 331 FunFam Transcription factor MYB44 69 115 - -
Dere13g0471 331 CDD SANT 17 59 IPR001005 -
Dere13g0471 331 SMART sant 66 114 IPR001005 -
Dere13g0471 331 SMART sant 14 63 IPR001005 -
Dere13g0471 331 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Dere13g0471 331 MobiDBLite consensus disorder prediction 194 232 - -
Dere13g0471 331 FunFam MYB transcription factor 15 66 - -
Dere13g0471 331 MobiDBLite consensus disorder prediction 163 179 - -
Dere13g0471 331 MobiDBLite consensus disorder prediction 153 232 - -
Dere13g0471 331 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0471 Dere-ChrDere13 6024469 6025464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0471 3 321 MYB Transcription Factor Family AT4G37260 52.795 1.05e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0471 Myb_DNA-binding 1.2e-17 CL0123