Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0458 ATGTCTAACCAGGACCACGAACAAGAACAATCACTCTTACAGGACTTACGCCAGGATGAGACGCAAGAAACCGCTTATGATTCCTCGGAGAAGGTCGTGGTTGTTGGAATTGACGAGGCCGACGACGACAATTGCGGTCGGGCGCCGCCATTCTCATGGAAGAAGCTCTGGCTCTTCACTGGTCCTGGGTTTCTCATGAGCATAGCGTTTCTCGATCCTGGGAATTTGGAGGGAGATCTTCAGGCTGGTGCTATTGCTGGCTACTCACTATTATGGCTCCTCATGTGGGCTACGGCTATGGGGCTTCTCGTTCAGCTTCTGTCGGCTCGGCTCGGCGTCGCCACTGGAAGGCACTTGGCTGAGCTGTGCAGAGAGGAGTACCCCACGTGGGCGAGGATGGTGCTGTGGGTTATGGCAGAGTTGGCTCTAATCGGAGCTGATATACAAGAGGTTATTGGAAGCGCTATTGCTATCAGGATTCTGAGTAATGGATTTATGCCTCTTTGGGCAGGAGTCGTCATTACAGCTTTTGATTGTTTTATTTTTCTATTTCTGGAGAACTATGGTGTGAGGAAATTGGAAGCACTTTTTGCTGTTCTCATTGGTATAATGGCACTCTCGTTTGCGTGGATGTTTGGTGAAGCAAAGCCCAATGGCGTAGATCTTCTTCTTGGTCTTTTAATTCCAAAACTTAGTTCCAAAACAATACGACAGGCTGTTGCAGTTGTGGGTTGCATTATCATGCCTCACAATGTATTCTTGCACTCTGCTCTTGTTCAATCAAGACAGATCGACCAACGCAAGAAAGGACGAGTTCAAGAAGCTCTTAATTATTATTCTATCGAGTCCACCGCTGCGCTTGCAGTCTCGTTAGTCATTAATATATTCGTCACAACTGTGTTTGCCAAGGGGTTCTATGGTACTGAACAAGCAAATAGCATTGGTCTTGTAAATGCAGGGCAGTATCTTCAGGAGAAGTATGGGGGTGGACTTTTCCCAATCTTATATATATGGGGCATCGGGTTATTAGCGGCTGGCCAAAGCAGTACCATTACTGGCACTTATGCTGGGCAATTTATCATGGGGGGTTTTCTAAATTTAAGGTTGAAAAAATGGGTGAGGGCTTTAATTACGAGAAGTTTTGCAATCATCCCAACCATGATAGTTGCTCTTGTCTTTGATACCTCTGAGGACTCGTTAGATGTCCTAAACGAATGGCTTAACATTCTCCAGTCAGTTCAAATCCCCTTTGCTCTAATTCCCTTGCTTTGTTTGGTGTCAAAGGAGCAGTTAATGGGCACTTTCAGAATTAGCCTCGTACTCAAGATTATTTCATGGCTTGTGGCTGCTTTAGTGATAGTCATAAACGGCTATCTTTTGCTGGACTTCTTCACTTCTGAAGTGAGTGGAGCAGTGTTTAGCACCATAGTGTGTGCTTTTACGGCTGCTTATGTTGCATTTATAGTCTACCTCGCTGCACGAGCAATTACCTTTTCACCTTGGCAAAGATTCACGCAAACAAAGACAAATACTAACACACAGAATTGA 1548 0.4535 MSNQDHEQEQSLLQDLRQDETQETAYDSSEKVVVVGIDEADDDNCGRAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCREEYPTWARMVLWVMAELALIGADIQEVIGSAIAIRILSNGFMPLWAGVVITAFDCFIFLFLENYGVRKLEALFAVLIGIMALSFAWMFGEAKPNGVDLLLGLLIPKLSSKTIRQAVAVVGCIIMPHNVFLHSALVQSRQIDQRKKGRVQEALNYYSIESTAALAVSLVINIFVTTVFAKGFYGTEQANSIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSFAIIPTMIVALVFDTSEDSLDVLNEWLNILQSVQIPFALIPLLCLVSKEQLMGTFRISLVLKIISWLVAALVIVINGYLLLDFFTSEVSGAVFSTIVCAFTAAYVAFIVYLAARAITFSPWQRFTQTKTNTNTQN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0458 515 Hamap Divalent metal cation transporter MntH [mntH]. 39 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PRINTS Natural resistance-associated macrophage protein signature 135 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 32 495 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 MobiDBLite consensus disorder prediction 1 27 - -
Dere13g0458 515 Pfam Natural resistance-associated macrophage protein 77 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere13g0458 515 NCBIfam Nramp family divalent metal transporter 61 431 - -
Dere13g0458 515 MobiDBLite consensus disorder prediction 10 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0458 Dere-ChrDere13 5846824 5849450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0458 31 501 Inorganic Solute Cotransporters AT2G23150 80.632 0.0 792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0649 09 9310628 9313688 Dere13g0458 13 5846824 5849450 CCT
Dere13g0458 13 5846824 5849450 Dere13g0458 13 5846824 5849450 ECH