Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0439 ATGTCGAAGGCGCGTGTGTACTCGGATGTCAATGTTCTTCGCCCCAAAGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGCGATCAAGATGATTATGAGGTTGTGCGAAAAGTAGGAAGGGGAAAATATAGTGAGGTTTTTGAAGGTATAAATGTTAATAGCAATGAGCGCTGCATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATCAAAAGGGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAATATCGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCAAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGCACAGATTTTAAAGTTTTGTACCCAACCTTGACTGATTATGACATACGCTACTACATATATGAGCTCCTTAAGGCATTGGATTATTGCCATTCTCAAGGCATAATGCATAGAGATGTGAAGCCTCACAATGTTATGATAGATCATGAGTTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCCTCAAGATATTTTAAGGGGCCTGAACTATTAGTTGATTTGCAAGACTACGATTACTCATTAGACATGTGGAGCCTTGGCTGTATGTTTGCAGGAATGATATTTCGCAAGGAACCATTCTTTTATGGTCACGACAACCATGATCAGCTTGTGAAAATAGCAAAGGTGCTTGGGACTGATGAATTAAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCATAGTCGCAAGCCCTGGTCTAAATTTATTAATGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTGGATAAGCTGCTTCGATATGACCATCAAGACAGGCTTACTGCAAGAGAAGCAATGGCGCACGCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGAACACAGTAA 1002 0.4042 MSKARVYSDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHAYFSQVRAAESSRMRTQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0439 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 329 IPR045216 GO:0004674|GO:0006468
Dere13g0439 333 FunFam Casein kinase II subunit alpha 20 110 - -
Dere13g0439 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0439 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0439 333 SUPERFAMILY Protein kinase-like (PK-like) 9 323 IPR011009 -
Dere13g0439 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Dere13g0439 333 FunFam Casein kinase II subunit alpha 111 322 - -
Dere13g0439 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Dere13g0439 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0439 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Dere13g0439 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Dere13g0439 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0439 Dere-ChrDere13 5641983 5647749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0439 32 319 Core Cell Cycle Gene Families AT3G48750 33.225 5.09e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Dere13g0439 Pkinase 3.3e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0630 09 9162068 9166736 Dere13g0439 13 5641983 5647749 CCT
Dere13g0439 13 5641983 5647749 Dere13g0439 13 5641983 5647749 ECH