Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0430 ATGAGTTGCAACGGGTGCCGAGTTCTTCGAAAGGGATGCAGCGAGACCTGCATATTGCGACCTTGCTTGCAGTGGATCGAGAGCCCTGAAGCCCAAGGTCACGCCACCGTGTTCGTAGCCAAGTTTTTTGGCCGTGCTGGCCTCATGTCTTTCATTTCCAACGTCCCTCAGAACCAGAGACCTGCTCTGTTTCAGTCCTTGTTGTTCGAAGCGTGTGGGCGAACGGTGAACCCTGTGAACGGAGCCGTCGGGTTGCTGTGGACGGGGAACTGGCACGTGTGCCAGGCCGCCGTGGAGACGGTGCTGCGCGGTGGCACGTTGAGGCCCATGCCGGAGCTTCTCGGCTTGGACGCATCTGCTCCGGCCACAGACGAAGCATCCGAAGCAGAGGTAACGTACAATGACATGTGGAGAATCCAAGATCCGAACCCGAATTCCCGATGCATTAACAAGGTCTCTTCCGGTGGCAAACGCAGACTGTCCGATGACTCGGCCAAGCTCCAAACCACCGATCTCGACCTCCGATTGACGCCGAGTTTCCTTCAAAAAGCGCCGGCCTACGGCTGCGGACCCAAAGTACGGCGGCCGGGTACACCGTCGATGAATTCGGAAGAATCCGTAACCACGGCAAGTTGCTTGGAAAGCGGGATCGGAGATCAGTACGGTCACGGCGGAGACCGGAAGCTTCTCAACCTGTTCATCTGA 705 0.5773 MSCNGCRVLRKGCSETCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISNVPQNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELLGLDASAPATDEASEAEVTYNDMWRIQDPNPNSRCINKVSSGGKRRLSDDSAKLQTTDLDLRLTPSFLQKAPAYGCGPKVRRPGTPSMNSEESVTTASCLESGIGDQYGHGGDRKLLNLFI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0430 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Dere13g0430 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 215 - -
Dere13g0430 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0430 Dere-ChrDere13 5527197 5528013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0430 1 234 AS2 family AT4G37540 60.000 1.06e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere13g0430 LOB 3.6e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0430 13 5527197 5528013 Dere09g0622 09 9055810 9056605 CCT
Dere09g0622 09 9055810 9056605 Dere13g0430 13 5527197 5528013 ECH
Dere13g0430 13 5527197 5528013 Dere13g0430 13 5527197 5528013 ECH