Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0428 ATGGAGACCTATTTAAATGAGAATTTTGAAGTGAAGTCCAAGAACTCATCTGAAGAGGTTCTTCAGAATTGGAGAAAACTATGTGGGGTTGTAAAGAACCCCAAAAGGCGGTTTCGCTTCACTGCCAATCTCACCAAGCGAGGCGAAGCGGCTGCTATGCGTCGCACCAATCAGGAGAAGCTGAGAGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAGTTTATCCAAGGTGTGCAATTAAGTGATTACACAGTGCCTGAGGAAGTTAGAGAAGCAGGTTTTCAGATCTGTGCTGATGAATTGGAGTCTATTGTTGAAAGACATGACTTAAAGAAGCTAAAGTATCATGGTGGGGTTGATGGTGTTTCAGAAAAGCTTTCTACCTCTACCACAGATGGTCTTAGCAATGAATCTGAGCAACTCATTAAGAGACAAGAGATTTACGGAATCAACAAATTCACCGAGAGTGAAGTCCGTAGTTTCTGGGTTTTTGTTTATGAGGCCCTTCAAGACATGACGCTAATGATCCTAGGTGTGTGTGCTCTTGTGTCTCTCGTAATTGGCATAGCAACAGAAGGATGGCCCAGAGGAGCTCACGATGGTCTAGGAATTGTTGTGAGTATCCTACTTGTTGTGTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATCTAGACAAGGAGAAAAAGAAGATTTCCATGCAGGTCACGAGAAATGGGTATAGGAGAAAAATGTCAATATATGACTTACTTCCTGGTGATATTGTGCATCTTGCTATAGGAGACCAGGTCCCTGCAGATGGACTCTTTATTTCAGGATTCTCTATGTTGATCGATGAGTCAAGTTTAACCGGAGAGAGTGAACCAGTGATGGTGAATTCTCAAAACCCATTTCTTCTTTCTGGAACTAAGGTTCAAGATGGGTCCTGCATGATGTTGGTCACAACCGTTGGGATGAGAACTCAATGGGGTAAATTGATGGCTACTTTGAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTCAAATTAAATGGAGTAGCCACAATCATAGGGAAGATAGGCCTATTCTTCGCAGTAATTACTTTTGCCGTTTTGATGAAGGGACTGATGACACGTAAACGACAAGAAGGAAGATTCTGGAGCGTGTCAGGGGACGATGCGATGGAGATGTTGGAATTCTTCGCCGTTGCAGTTACAATCGTTGTCGTTGCTGTCCCGGAAGGTTTGCCATTAGCTGTGACATTGAGCCTTGCGTTTGCTATGAAGAAAATGATGAACGACAAAGCCCTTGTTCGACATTTGGCGGCCTGTGAGACTATGGGATCAGCTACAAGTATATGTAGTGACAAGACAGGGACACTGACAACCAACCACATGACTGTCGTCAAAACCTGCATTTGTATGAACACCAAGGAAGTAGGCAATAATAATAATAATAAGGATTCTTCTAGTTTTTGCTTTGAATTACCGGATTCTACTATGAAACTGTTACTAGAGTCGATATTTAATAACACTGGGGGAGAAGTCGTTGCTAGAAGAAAAAGAAAGAAAAAACGTGAGATTTTAGGGACGCCTACAGAGGCAGCAATATTGGAGTTTGGGTTGTCACTAGGTGGGGACTTTCAAAAGGAGCGAAAAGCATGTAAGCTTATGAAGGTTGAGCCATTCAATTCGGAAAAGAAAAGGATGGGTGTAGTTGTGGAGCTTCCTGATGGAAATTTACGAGCACATTGTAAAGGTGCTTCTGAAATAGTTCTGGCTGCTTGTGACAAAGCGATCAATTCAAACGGTGAGGTTGTTCCACTTGATGGAGAAAAAAGTAATTATCTTAAGGATACAATAGATTCATTTGCTAGTGAGGCACTTAGAACTCTATGCCTTGCCTGTAAGGAATTAGAACATGGGTTCTCTGCTGATGACCCTATTCCCACTTCTGGATATACATGTATCGGAATTGTGGGTATCAAAGATCCTGTTCGTCCTGGTGTCAAGGAATCTGTTGCAATTTGTCGTTCAGCTGGTATAACAGTAAGGATGGTCACCGGTGACAATATTAATACTGCAAAGGCTATAGCCAGAGAATGTGGGATCTTAACTGAAAATGGCATAGCCATTGAAGGTCCAGATTTCAGAGACAAGACTCAGGAGGAATTGTTTGAACTGATCCCCAAAATTCAGGTTATGGCTCGATCTTCACCTTTAGATAAGCATACATTGGTGAAACACTTGCGTACTACGTTTGGCGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGACGCCCCTGCCCTTCATGAGGCAGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTTTGGATGATAATTTCTCCACTATCGTGACAGTGGCAAAATGGGGCCGTTCAGTTTATATTAATATTCAAAAATTCGTGCAGTTTCAGTTGACAGTTAATGTAGTTGCATTACTTGTCAACTTCAGTTCAGCATGCACGACAGGAAATGCACCCCTCACAGCAGTTCAACTATTGTGGGTGAACATGATAATGGACACATTGGGAGCACTTGCACTAGCAACTGAACCTCCAAACGATGAATTAATGAAGCGTTCACCAGTGGGAAGGAAGGGGAGTTTCATCAGCAATGTGATGTGGAGGAATATCTTAGGCCAATCCTTGTATCAGGTCTTGGTGATATGGATTCTTCAGTCCAAAGGGAAATGGATCTTTGGTATGAAGGGCCCAGATTCTGACCTCTTGTTAAACACACTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTCAATGAGATAAGCTCACGCGAGATGGAGGAAATAGATGTATTTAAAGGCATACTGGATAATCATGTTTTCATGGGTGTCATAAGTGTCACTGTTTTGTTTCAAATCGTAATAGTTGAATATTTAGGAACCTACGCTAACACAACACCCCTTGCTCCAATATATTGGCTTTTTAGCATATTCATTGGATATTTAGGCATGCCCATTGCTGCTCGCTTAAAGAAGATCCCTGTCAAAGCATGA 3069 0.42 METYLNENFEVKSKNSSEEVLQNWRKLCGVVKNPKRRFRFTANLTKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQLSDYTVPEEVREAGFQICADELESIVERHDLKKLKYHGGVDGVSEKLSTSTTDGLSNESEQLIKRQEIYGINKFTESEVRSFWVFVYEALQDMTLMILGVCALVSLVIGIATEGWPRGAHDGLGIVVSILLVVFVTATSDYRQSLQFKDLDKEKKKISMQVTRNGYRRKMSIYDLLPGDIVHLAIGDQVPADGLFISGFSMLIDESSLTGESEPVMVNSQNPFLLSGTKVQDGSCMMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLMKGLMTRKRQEGRFWSVSGDDAMEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVVKTCICMNTKEVGNNNNNKDSSSFCFELPDSTMKLLLESIFNNTGGEVVARRKRKKKREILGTPTEAAILEFGLSLGGDFQKERKACKLMKVEPFNSEKKRMGVVVELPDGNLRAHCKGASEIVLAACDKAINSNGEVVPLDGEKSNYLKDTIDSFASEALRTLCLACKELEHGFSADDPIPTSGYTCIGIVGIKDPVRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTENGIAIEGPDFRDKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACTTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRKGSFISNVMWRNILGQSLYQVLVIWILQSKGKWIFGMKGPDSDLLLNTLIFNSFVFCQVFNEISSREMEEIDVFKGILDNHVFMGVISVTVLFQIVIVEYLGTYANTTPLAPIYWLFSIFIGYLGMPIAARLKKIPVKA 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0428 1022 Pfam Cation transporter/ATPase, N-terminus 115 184 IPR004014 -
Dere13g0428 1022 Gene3D - 16 76 - -
Dere13g0428 1022 PANTHER CATION TRANSPORTING ATPASE 64 1019 - -
Dere13g0428 1022 Pfam E1-E2 ATPase 235 430 - -
Dere13g0428 1022 NCBIfam HAD-IC family P-type ATPase 392 474 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere13g0428 1022 NCBIfam HAD-IC family P-type ATPase 730 837 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere13g0428 1022 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 1020 IPR023298 -
Dere13g0428 1022 Gene3D - 449 804 IPR023214 -
Dere13g0428 1022 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Dere13g0428 1022 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Dere13g0428 1022 PRINTS P-type cation-transporting ATPase superfamily signature 656 667 - -
Dere13g0428 1022 PRINTS P-type cation-transporting ATPase superfamily signature 783 795 - -
Dere13g0428 1022 PRINTS P-type cation-transporting ATPase superfamily signature 759 778 - -
Dere13g0428 1022 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Dere13g0428 1022 PRINTS P-type cation-transporting ATPase superfamily signature 678 688 - -
Dere13g0428 1022 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Dere13g0428 1022 SMART Cation_ATPase_N_a_2 113 189 IPR004014 -
Dere13g0428 1022 PRINTS H+-transporting ATPase (proton pump) signature 759 775 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere13g0428 1022 PRINTS H+-transporting ATPase (proton pump) signature 791 816 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere13g0428 1022 PRINTS H+-transporting ATPase (proton pump) signature 615 633 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere13g0428 1022 Gene3D - 138 335 - -
Dere13g0428 1022 FunFam Calcium-transporting ATPase 776 1022 - -
Dere13g0428 1022 FunFam Calcium-transporting ATPase 652 804 - -
Dere13g0428 1022 SUPERFAMILY Calcium ATPase, transduction domain A 238 332 IPR008250 -
Dere13g0428 1022 Gene3D - 167 1006 - -
Dere13g0428 1022 FunFam Calcium-transporting ATPase 16 76 - -
Dere13g0428 1022 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 668 IPR023299 GO:0000166
Dere13g0428 1022 Pfam Cation transport ATPase (P-type) 516 596 - -
Dere13g0428 1022 FunFam Calcium-transporting ATPase 462 663 - -
Dere13g0428 1022 Pfam Cation transporting ATPase, C-terminus 844 1017 IPR006068 -
Dere13g0428 1022 Gene3D - 462 663 IPR023299 GO:0000166
Dere13g0428 1022 SFLD C1.7: P-type atpase like 434 811 - -
Dere13g0428 1022 FunFam Calcium-transporting ATPase 215 335 - -
Dere13g0428 1022 SUPERFAMILY HAD-like 451 864 IPR036412 -
Dere13g0428 1022 NCBIfam calcium-translocating P-type ATPase, PMCA-type 108 1021 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Dere13g0428 1022 SFLD p-type atpase 434 811 IPR044492 -
Dere13g0428 1022 CDD P-type_ATPase_Ca_PMCA-like 143 892 - -
Dere13g0428 1022 Pfam haloacid dehalogenase-like hydrolase 655 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0428 Dere-ChrDere13 5489849 5494023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0428 1 1020 Primary Pumps ATPases AT4G37640 80.705 0.0 1693