Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0421 ATGGGAGAGGACTACGGGAGGGTGATTGTGAGAGAGTTCGACCCAAGTAGAGACAGAGAGAAAGTGGAAGCAGTTGAGAGAATATGTGAAGTTGGACCCAGTGGGAAGCTTACCCTCTTCACCGACCTCCTTGGTGACCCAATTTGCAGGGTCCGCCACTCACCTGCTTTCCTCATGCTGGTGGCTGAGATGGGCCAAGAGATCGTAGGAATGATAAGGGGTTGCATCAAAACCGTCACATGCGGAAAGAAGCTCTCCAGAAATGGAAAAAACACTACTCATTCCACTAAACCACTCCCAGTGTACACCAAACTCGCCTATATCTTAGGCCTTCGTGTCTCTCCTTCTCACCGGAGAATGGGAATAGGGTTGAAGCTGGTGAATACAATGGAGGAGTGGTTCAGAGATCATGGAGCTGAATACTCGTACATGGCAACGGAAAACGACAATACAGCGTCCGTTAAGCTCTTCACCGACAAATGCGGATACTCTGAGTTCCGTACACCGTCCGTCCTGGTCAACCCCGTTTTTGCTCATCGAATCAATCTCTCTCAGAATATCACCATCATCCAACTCGACCCCTTCGACGCCGAGATACTCTATCGCCGCCGCTTCGCCACCACCGAGTTCTTCCCGCGCGACATTGGCTCTATCCTCAACAACAAACTCACCCTCGGCACCTTCCTCGCCGTACCACGCGGGTCCTACACTCCGCACACGTGGCCCGGGTCGGAGCTCTTCCTCTCGGACCCACCCGAGTCATGGGCGGTTGTCAGCGTCTGGAACTGTAAGGACGTGTTCACGCTCGAAGTACGGGGCGCGTCGCGCGTTAAGCGGACTCTCGCCAAAACGACGCGAATACTAGACCGGGCGTTGCCGTTTCTGCAATTGCCGTCGTTTCCGGATTTTTTCAGGCCGTTCGGGTTTCACTTCATGTATGGGTTGGGAGGGGAAGGCCCTGAGGCGGTGAAGATGGTGAAGGCGTTGTGCGGGCACGCGCACAACCTCGCGAAAGAGCGTGGGTGTGGGGTGGTGGTGACGGAGGTTTCGAGCCGCGAACCGTTGAGGTTGGGGATACCGCACTGGAAGATGCTATCTTGCGCTGAAGATCTATGGTGCATCAAGAGGCTTGGGGAAGACTATAGTGACGGCTCTGTCGGTGACTGGACAAAATCTCCACCAGGATTGTCCATTTTTGTTGACCCTAGAGAGTTCTGA 1218 0.5419 MGEDYGRVIVREFDPSRDREKVEAVERICEVGPSGKLTLFTDLLGDPICRVRHSPAFLMLVAEMGQEIVGMIRGCIKTVTCGKKLSRNGKNTTHSTKPLPVYTKLAYILGLRVSPSHRRMGIGLKLVNTMEEWFRDHGAEYSYMATENDNTASVKLFTDKCGYSEFRTPSVLVNPVFAHRINLSQNITIIQLDPFDAEILYRRRFATTEFFPRDIGSILNNKLTLGTFLAVPRGSYTPHTWPGSELFLSDPPESWAVVSVWNCKDVFTLEVRGASRVKRTLAKTTRILDRALPFLQLPSFPDFFRPFGFHFMYGLGGEGPEAVKMVKALCGHAHNLAKERGCGVVVTEVSSREPLRLGIPHWKMLSCAEDLWCIKRLGEDYSDGSVGDWTKSPPGLSIFVDPREF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0421 405 FunFam Probable N-acetyltransferase HLS1-like 17 170 - -
Dere13g0421 405 CDD NAT_SF 59 141 - -
Dere13g0421 405 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 46 167 IPR016181 -
Dere13g0421 405 Gene3D - 21 170 - -
Dere13g0421 405 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 8 188 IPR000182 GO:0016747
Dere13g0421 405 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 6 405 - -
Dere13g0421 405 Pfam Acetyltransferase (GNAT) family 53 163 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0421 Dere-ChrDere13 5429051 5430571 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Dere13g0421 Acetyltransf_1 3e-18 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0616 09 9002322 9004949 Dere13g0421 13 5429051 5430571 CCT
Dere13g0421 13 5429051 5430571 Dere13g0421 13 5429051 5430571 ECH