Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0420 ATGGCCATAAGGCCCTTCACCTTCTCGCGTGATAAATTGATCTCTCTGCTACTCTGTACTCCTCCTTCTTCTTCTTTCTCTCCCTGGCGTTCCAAGCTTTCGCTGTCCCCTCAATTGCTTTTTCCCATTTTTGTGTTCCGTCACTTCGAGCCGTCGGCGGCAACTTCGCTCTCACGCACTCGCCAGTATTATACGCCACCGCAACCGCACGACGACCGCCTGCGGTCGCTGCCACCCAACACCCTGGCGCAGAAGATTGGGAAATCCACTCGCCGATCGGGCGCTGCCTCTAAGGCGAGGGTTTATGCCGATGTCAACGTCGTCCGTCCCAAGGAATACTGGGACTATGAGTCGCTTACCGTCCAGTGGGGGGAGCAAGATGACTATGAGGTATCGAGGAAGGTGGGAAGGGGGAAATACAGTGAGGTTTTTGAGGGTGTTCACTGCACGGATAATGAAAAATGTGTCATCAAGATTCTGAAACCGGTGAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTGCAGAATCTTTGTGGAGGGCCCAATATTGTGAAGTTGCTTGACATTGTTAGAGATCAGCAATCGAAGACTCCAAGCCTTATTTTTGAATATGTTAATAACACTGATTTTAAAGTGCTCTATCCTACGTTGTCAGACTATGATATACGATATTACATCTTTGAACTTCTTAAGGCCCTGGATTATTGCCATTCACAAGGAATCATGCATCGGGACGTAAAGCCACATAATGTAATGATTGACCATGAGCAACGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAATTCTATCATCCAGGCAAAGAATATAATGTTCGTGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGAATGATTTTTCGTAAGGAGCCATTCTTTTATGGACATGATAACTACGATCAGCTTGTCAAAATTGCAAAAGTACTAGGGACAGATGAATTGACTGCTTATTTGAACAAGTACCGGATTGAGTTGGACCCGCATCTTGCTGCGCTAGTTGGAAGGCATAGCCGGAAGCCATGGACAAAGTTCATTAATGTGGATAATCAACATTTGGCTGTTCCTGAGGCTATTGATTTTGTTGACAAGTTGCTGCAATATGATCACCAAGAACGGCCCACTGCAAAAGAAGCCATGGCGCATCCTTACTTCAATCCAGTCAGAAATGCAGAAAGCAGCAGAACTCGCACTCATTGA 1287 0.453 MAIRPFTFSRDKLISLLLCTPPSSSFSPWRSKLSLSPQLLFPIFVFRHFEPSAATSLSRTRQYYTPPQPHDDRLRSLPPNTLAQKIGKSTRRSGAASKARVYADVNVVRPKEYWDYESLTVQWGEQDDYEVSRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIFELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELTAYLNKYRIELDPHLAALVGRHSRKPWTKFINVDNQHLAVPEAIDFVDKLLQYDHQERPTAKEAMAHPYFNPVRNAESSRTRTH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0420 428 Pfam Protein kinase domain 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0420 428 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Dere13g0420 428 SMART serkin_6 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0420 428 PANTHER CASEIN KINASE II SUBUNIT ALPHA 88 424 IPR045216 GO:0004674|GO:0006468
Dere13g0420 428 FunFam Casein kinase II subunit alpha 115 205 - -
Dere13g0420 428 Gene3D Transferase(Phosphotransferase) domain 1 206 414 - -
Dere13g0420 428 Gene3D Phosphorylase Kinase; domain 1 129 205 - -
Dere13g0420 428 ProSiteProfiles Protein kinase domain profile. 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0420 428 MobiDBLite consensus disorder prediction 408 428 - -
Dere13g0420 428 SUPERFAMILY Protein kinase-like (PK-like) 102 418 IPR011009 -
Dere13g0420 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Dere13g0420 428 FunFam Casein kinase II subunit alpha 206 417 - -
Dere13g0420 428 CDD STKc_CK2_alpha 110 414 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0420 Dere-ChrDere13 5396401 5406971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0420 127 415 Core Cell Cycle Gene Families AT1G76540 30.573 7.40e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Dere13g0420 Pkinase 2.1e-65 CL0016