Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0408 ATGGGTGCTCCTAAGCAGAAATGGACTGCTGAAGAAGAAGCAGCACTGAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACTATACTTACAGATCCGGAGTTCAGTGCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATTTGGGGATCGAGGCAGAAGGCAAAGCTTGCACTTAGAAGGAATGTTCCAACCCCTAAAAATGATAATAACCATAGTGCCTTGGGCACCCTTGTTCAACGCGATGAAGAAGTTCCTGATACTAAGCCTCAAGCAGTTTCCGGTGTAACATTGAAATCTGCTAATTCAAAACGACAAATATCGAGGTTGGATAATCTTATATTAGAGGCTATTATCAATTTGAAGGAACCTAAGGGTTCTGACAGGGCTGCCATTGCTACATATGTAGAGGATCAATACTGCTCTCCACCAAATCTCAGAAAGATCTTGTCAACAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAATAAAGGTGAAGCATAGGTACAGGATTACTCCAGGTTCAACGTTGTCTGAGAAAAGAAGATGCTCTTCCTTGCTACTCCTGGATGAAAGGCCCAAAGATTCTTCTAAAGCAGAGAAGAATGATGTCAACATCCTTTCAAAATCCAAAATTGATGAAGAGCTATCAAAAGTGAAGGGCATGACAGCGCAAGAGGTAGCAGCAGCTGCTGCTAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCAGAGGCTGAGGCTGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCACGAGTATTTGCAAAAGCAGCAATCAAAGCACTAAAGTGCAAATCTCTTCATATTTGATGCTGTGAACTTCTGCATCGTTGTCTGCAGCAGCATATTGGCTTGAGATCAGAGTTCTGTTATACTTCCTGTCCGTATTTCATAACTGCACATATTTTAGGCTTGTAA 993 0.433 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALRRNVPTPKNDNNHSALGTLVQRDEEVPDTKPQAVSGVTLKSANSKRQISRLDNLILEAIINLKEPKGSDRAAIATYVEDQYCSPPNLRKILSTKLKHMVASGKLIKVKHRYRITPGSTLSEKRRCSSLLLLDERPKDSSKAEKNDVNILSKSKIDEELSKVKGMTAQEVAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAARVFAKAAIKALKCKSLHIXCCELLHRCLQQHIGLRSEFCYTSCPYFITAHILGL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0408 330 Gene3D - 2 59 - -
Dere13g0408 330 CDD H15 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0408 330 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Dere13g0408 330 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Dere13g0408 330 CDD SANT_TRF 6 57 - -
Dere13g0408 330 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Dere13g0408 330 Coils Coil 242 276 - -
Dere13g0408 330 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Dere13g0408 330 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0408 330 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0408 330 FunFam Telomere repeat-binding factor 1 2 58 - -
Dere13g0408 330 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere13g0408 330 Gene3D - 115 196 IPR036388 -
Dere13g0408 330 SMART sant 4 59 IPR001005 -
Dere13g0408 330 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Dere13g0408 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0408 Dere-ChrDere13 5272807 5277012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0408 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 56.314 8.54e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere13g0408 Linker_histone 1e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0598 09 8860302 8863237 Dere13g0408 13 5272807 5277012 CCT