Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0386 ATGTATACTGATATTCCTTCTTCAGACCCTCATCACCAGCATCAGCATGGGACACAGCCTTCCTCTATTGCTGCTGAAACAATTCCAGCAAGCTTGTACCACCCCACTCATCTTCCAAACTATGGCAGCTACTATGAACCTGAAGGTGAAAATGCTGGCTTCCATGTTCCTTCAGCCCTGCCTGTCATGCAGCTCAAGTCTGATGGCTCTCTATATGTAATGGAAGCTATGAGCAGGTCACAACCACAAGATATGGCAGCAACTACAACCCCTAAACTGGAGAATTTATTAGGTGGAGCAATGCCTTTGTGCTTTGACGGTATGGTTTACAACCAACTCTTATATTACTCTGCCTTGAGAAGCCATGATGTGATGCTAGAACCAGCTAACCATACACAAGAGTCAAAGATGGTTGCTGCTGTAGAGGATAATGGAGGCGAAGCTGGGTCCGTTGGACCTACGGCATTTGGAGATTTGCAATCATTAAGGTTGTCCATGAGTCCTAGCTCACAATCAAGCTGTATTACAAGTTCTTCTAGGACTTCACCGGGTGTCATGGACTCTGTTGCCATGGATACAAAGAAAAGGGGACTTGAAAAGGTTGATCAGAAGCAGATTGTTCATAGGAAATCAATAGATAGCTTTGGCCAAAGAACCTCTCAATATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGTCAAAGCAGGAAAGGAAGGCAAGTGTATCTTGGTAAGGTCTTTTTCCCCATATATGACTCAAATCTTAGAGCTTACATGAACCAGACTGTCATAACATATGCTGATGCAAGTAATTCCAAAATTTTGATTTCAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGGCCCTCCACTCATGTCAATTTCCCAAGTGAACTGGAACAGATGAAGAACATGACAAGACAAGAATATGTTGCTCATTTACGCAGAAAAAGCAGCGGATTCTCAAGAGGAGCTTCCATGTACAGAGGAGTCACAAGACATCATCAACATGGACGATGGCAAGCTCGAATTGGTAGGGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACTCAAGAGGAAGCAGCTGAATCCTACGACATAGCTGCTATTAAATTTCGTGGAGTAAATGCAGTGACCAACTTTAATTTATCAAGATATGATGTGGAAAAAATTATGGCAAGCAGTAACCTTCTTAGTGGAGAACAAGCGAGGCGAAACACACAGATCGATGCCAGAAACGAAGCCATTCTGATGCACAAGACTAGTTGCGAACAAATAGATCAAAATCCACCAAGAATTGAGGATTATTCAATGGCTTCGAACAACATGATTCATCAAGCAGTAGAGGACCAAGCCAAGAGCAGAAGGCTTGTGTCAAATCCTTCTTCGTTGATGACAAGCTTGAGCAGCTCAAGAGAAGGAAGCTCAGATACAACTAGCCTACCAGTTTTCACTGGTATGCATTCATCAGCATCAAACGTCAATTCTTGGGGGCTTTCTTTGCCTCACATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1626 0.4354 MYTDIPSSDPHHQHQHGTQPSSIAAETIPASLYHPTHLPNYGSYYEPEGENAGFHVPSALPVMQLKSDGSLYVMEAMSRSQPQDMAATTTPKLENLLGGAMPLCFDGMVYNQLLYYSALRSHDVMLEPANHTQESKMVAAVEDNGGEAGSVGPTAFGDLQSLRLSMSPSSQSSCITSSSRTSPGVMDSVAMDTKKRGLEKVDQKQIVHRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGKVFFPIYDSNLRAYMNQTVITYADASNSKILISGGYDMEEKAARAYDLAALKYWGPSTHVNFPSELEQMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAESYDIAAIKFRGVNAVTNFNLSRYDVEKIMASSNLLSGEQARRNTQIDARNEAILMHKTSCEQIDQNPPRIEDYSMASNNMIHQAVEDQAKSRRLVSNPSSLMTSLSSSREGSSDTTSLPVFTGMHSSASNVNSWGLSLPHMPVFAAWTDA 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0386 541 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 136 443 - -
Dere13g0386 541 ProSiteProfiles AP2/ERF domain profile. 352 410 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 Pfam AP2 domain 353 402 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 SUPERFAMILY DNA-binding domain 351 412 IPR016177 GO:0003677
Dere13g0386 541 ProSiteProfiles AP2/ERF domain profile. 221 321 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 MobiDBLite consensus disorder prediction 1 21 - -
Dere13g0386 541 CDD AP2 351 412 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 Gene3D AP2/ERF domain 220 322 IPR036955 GO:0003700|GO:0006355
Dere13g0386 541 Gene3D AP2/ERF domain 352 412 IPR036955 GO:0003700|GO:0006355
Dere13g0386 541 MobiDBLite consensus disorder prediction 479 509 - -
Dere13g0386 541 FunFam AP2-like ethylene-responsive transcription factor 351 412 - -
Dere13g0386 541 CDD AP2 220 321 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 SMART rav1_2 352 416 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 SMART rav1_2 221 327 IPR001471 GO:0003700|GO:0006355
Dere13g0386 541 SUPERFAMILY DNA-binding domain 285 322 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0386 Dere-ChrDere13 5075528 5077991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0386 28 541 AP2-EREBP Transcription Factor Family AT4G37750 46.491 2.77e-146 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere13g0386 AP2 6.6e-09 CL0081