Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0369 ATGGGTCTTCACGATTCTACTACCTCAGACCTTGAGCTTGTTCTAGGGCTAAGTTTGAGTGTTGCACATGATCATCGTACAGGTACTCCAAAGAAATTACCCTCCTCCAGTTTCACGGTGACAAGTGATTGTGAGCCATCTTTGACGTTGGGTCTCTCTGGTGACACTTACCATGTGCCAAAGAAGATTGATGTGAATACCAAAGTTTCTGAAGATACAGCTCTTGACTTGTCTCGCCAAACTTCTTCGCCGCACAGTGCTGTTTCGTCCTTCTCCAGTGGGAGAGTCAAGAGGGAGAGAGATCTAAGCAGCGAAGACGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCAGAGAGGGTTTCTTCCAGAGTGAGCGATGAAGACGAAGACGGAACTAATGCCAGAAAGAAGCTCAGGCTTTCCAAAGAACAATCTGCTCTCCTAGAGGAAAGCTTCAAACAACACAGCACACTCAACCCTAAGCAAAAGCAAGCCTTAGCCAGACAACTGAATCTACGGCCTCGCCAAGTTGAAGTCTGGTTCCAAAACCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTCTTAAAGAAATGCTGTGAAACGCTGACGGATGAAAACAGGAGGCTCCAGAAAGAGCTGCAAGAGCTGAAGGCACTGAAGCTAGCTCAGCCCTTGTACATGCCGATGCCGGCGGCGACACTCACCATGTGCCCATCGTGCGAGAGGCTGGGTGGCGTGAACGACGGTGGTTCCAATAAGACCCAACTGATCTCTATGGCTCCCAAGTCTCACTTGTACAACCCCTTCCCCAATCCTTCAGCAGCATGTTGA 846 0.5024 MGLHDSTTSDLELVLGLSLSVAHDHRTGTPKKLPSSSFTVTSDCEPSLTLGLSGDTYHVPKKIDVNTKVSEDTALDLSRQTSSPHSAVSSFSSGRVKRERDLSSEDAEAEAEAEAEAERVSSRVSDEDEDGTNARKKLRLSKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVNDGGSNKTQLISMAPKSHLYNPFPNPSAAC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0369 281 SMART HOX_1 133 195 IPR001356 GO:0003677
Dere13g0369 281 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Dere13g0369 281 MobiDBLite consensus disorder prediction 114 140 - -
Dere13g0369 281 FunFam Homeobox-leucine zipper protein 18 120 196 - -
Dere13g0369 281 Pfam Homeodomain 135 189 IPR001356 GO:0003677
Dere13g0369 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 258 - -
Dere13g0369 281 SMART halz 191 234 IPR003106 GO:0006355|GO:0043565
Dere13g0369 281 Gene3D - 139 189 - -
Dere13g0369 281 SUPERFAMILY Homeodomain-like 133 199 IPR009057 -
Dere13g0369 281 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355|GO:0043565
Dere13g0369 281 Coils Coil 197 227 - -
Dere13g0369 281 MobiDBLite consensus disorder prediction 75 93 - -
Dere13g0369 281 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Dere13g0369 281 MobiDBLite consensus disorder prediction 75 140 - -
Dere13g0369 281 CDD homeodomain 135 192 IPR001356 GO:0003677
Dere13g0369 281 Pfam HD-ZIP protein N terminus 13 98 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0369 Dere-ChrDere13 4890804 4892050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0369 1 281 Homeobox Transcription Factor Family AT4G37790 59.932 9.44e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere13g0369 HD-ZIP_N 0.00018 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0562 09 8480111 8481309 Dere13g0369 13 4890804 4892050 CCT