Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0358 ATGAACGACTACACTCTCCGGGCTTCCCTCTCTTTTTCAATCACACCATTAAAATGTGAGCGATCTCTCTTTTTCAATCACACCATTGTACGCCTTGTTTACTGCAAATTGTCGAAGATGGAAAACCTCTTTCTCAAACATTTGCCCCTTTTTTCACTACTATCTCTACTGTGCTTGACTCGTTTCTCGCAGCCGGCGTCTTTAGTCGGTGATTCTGAAATCCTGCTTGGGGTCAAGCGGACTCAGATTTTAGATAAGAATGAGAGTCTCAAAAATTGGGTTCCGAACGGAGATCACAATCCCTGCAATTGGACTGGCATTACCTGTGATGAGCGCAATCGCTCAGTTGTCTCCATTGACATCTCCGGGACTGGCATTTACGGTGGGTTCCCTTTTGGTTTTTGTCGCATTCCGACCCTGCGAAGCCTTTCTGTTGCGCAAAATTTTCTTGGTGATGTCATCTCTCCCCAGTCGCTCCATCTCTGCTCCCACCTTCGTCTCTTGAACCTCTCTGATAATTGCTTTGTCGGCGAGTTGCCGGAATTCTCGTTGGGGTTTTCTGAACTAAGACAGCTTGATTTCTCGCGTAACAACTTTACCGGCGATATCCCGGCCAGTTTTGGCCGGTTTCCGCAACTGAGGGTGCTCATTTTGTCTTCAAATTTACTCAACGGAACCATTCCTCCGTTCTTAGGCAATCTTAGTGAGTTAACTCGATTGGAGCTCGCTTATAATCCATTTACTCCAGGACCTTTACCCTCCCAGCTAGGAAATTTAACAAAGCTCGAAAATCTGTTCCTTCCTCGAGTAAATGTCGAAGGTAATATTCCGAACTCGATAGGGAAGCTGGTCTCACTTAAGAACTTGGATTTGTCTGATAATTTCCTGTCAGGTCAAATTCCGGATAGTATTTCGGGTTTGAAAAGGGTAGAGCAAATTTTGCTTTTTTTAAACCAACTCTCTGGTGAAATTCCTCGAGGTTTAGGAAACCTTAGCACTTTGATTAGTTTGGACCTCTCTCAAAACAGTCTCACAGGGACATTGCCGGATTCAGTCGCTGCCTTGCATCTCTATGATCTGGGCTTGAACGACAATTTGCTCGAAGGACAAATCCCGGTAAGTCTAGCTTCAAATCCGAATTTACAGAGGCTGCGTCTCTTCAATAACAGCTTTACTGGTAAACTACCGGAAGACTTAGGACGAAACTCTGACTTAGAGGCGCTTGATGTTTCTACTAATGACTTAATTGGTGAATTACCTAAGTACCTCTGTGAAAGGAACAAGTTTCAGCGTCTCATTACATTCACGAATCGATTTTCGGGAACTCTGCCTGAGCAGTATGGTGACTGTCATTCGCTCGACTATGTCAGAATCGAGAATAACCAGCTTTCCGGCGTGGTGCCTCCAAAATTCTGGAAACTTCCTGGTCTTGAATTTCTGAAAATGGATAACAACAGGTTCGAAGGTTCAGTCCCCATCTCCGGCGCTCAGGGACTCACCGTACTTCTTATATCCGGTAACAGATTTTCTGGACATTTCTCGACAGATATTTGTGAACTCCATAAGCTTATAGATATTGATATCAGCCGGAACCGGTTTACCGGTGAGGTTCCGTCATGTATAACTGGATTGACGATGTTACAGAAGCTGAGTATGCAGGAGAACATGTTCACCGGCGAGATTCCGAGAAACGTCAGTTCCTGGATTGACTTGACCCTACTGAACTTGTCGTATAACAAATTATCCGGTAAGATTCCGCCAGAACTTGGTAATTTGCCAGACTTGACTTATCTTGATCTTGCCGTAAATTTCCTGACGGGGGTAATTCCACCGGAGTTAGCAAAACTCAAGCTCAGCCAGTTCAACTTGTCGGGAAACAAATTGTCAGGAAAAGTACCTTCTGGTTTCGACAACCAAATCTATTTGTCGGCTCTAGTTGGTAATCCGGATCTTTGCAGCCCAGTCATAAAAGCTCTTCATCCTTGTTCCACATCCGGACCCTTTTCTTCGATTGCTATAATTGTTCTATCTACCTGCGGTGTACTCCTCCTCGGGTCTCTGCTCTGGTTCCTAAAGAGCAAGAAGTCATTCTTCTTACGTGGCAAATCCAAGCGCTCCTTTATGACAACTACATTTCAAAGGATCAGGTTTAAGGAAGAAGACGTCGTCCCATTGTTAACCAGCGAGAACCTTATTGGCAAAGGGAGTTCGGGCCAGGTCTATAGGGTGAAGCTTAAGACAGGGGAGATAGTTGCTGTGAAGAAACTCTGGGGAGGAGGTACAGAAAAACCGGATGCAAAATCGATGTTCAAGTCAGAGATTGAGACATTGGGTCGAATTCGCCATGTTAATATAGTGAAACTCTTATTTAGTTGCAGCGCTGACGATTTCCAGATTCTGGTGTTCGAGTACATGGAGAATGGTAGCTTAGGTGACGTTTTGCATGGTGAAAAGTGCGGGGAGTTATTGGATTGGTCCAGGCGGTTTACCATAGCAGTTGGTGCAGCTCAGGGGTTGGCTTATTTACATCACGACTGTGTGCCTGCCATAGTTCACAGGGACGTCAAGAGTAACAACATATTGCTGGACCATGAGTTCAGGCCTCGTGTTGCAGACTTTGGGTTGGCTAAGACCTTGCAGCGTAAGTTAAACGAAGACGGTGGTGCTATGTCCAGGGTCGCTGGTTCCTATGGTTACATTGCTCCAGAGTATGCTTACACACTAAAAGTGACGGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTGCTGATGGAATTGATCACTGGCAAGAGGCCAAATGACCCATCCTTTGGTGAGAACAGGGATATAATAAAGTGGCTCACTGAGACTGCTTTATCGTCTCCTCGAGGAGGAAGAGGCAATGTAGAAGCTCAACGCAGTAATGTAGCCCAGATTGTAGACCCTAGATTGGATCCCTCCTCATGTGATCTTAAAGAGATTGAGAAAGTTTTGAATGTGGCTCTGCTTTGCACTGCAACCTTTCCCATTAATAGACCCTCAATGAAAAGGGTGGTAGACTTGCTCAAGGAACCAATGGCTTGTCCCAAGTCTTGA 3075 0.4524 MNDYTLRASLSFSITPLKCERSLFFNHTIVRLVYCKLSKMENLFLKHLPLFSLLSLLCLTRFSQPASLVGDSEILLGVKRTQILDKNESLKNWVPNGDHNPCNWTGITCDERNRSVVSIDISGTGIYGGFPFGFCRIPTLRSLSVAQNFLGDVISPQSLHLCSHLRLLNLSDNCFVGELPEFSLGFSELRQLDFSRNNFTGDIPASFGRFPQLRVLILSSNLLNGTIPPFLGNLSELTRLELAYNPFTPGPLPSQLGNLTKLENLFLPRVNVEGNIPNSIGKLVSLKNLDLSDNFLSGQIPDSISGLKRVEQILLFLNQLSGEIPRGLGNLSTLISLDLSQNSLTGTLPDSVAALHLYDLGLNDNLLEGQIPVSLASNPNLQRLRLFNNSFTGKLPEDLGRNSDLEALDVSTNDLIGELPKYLCERNKFQRLITFTNRFSGTLPEQYGDCHSLDYVRIENNQLSGVVPPKFWKLPGLEFLKMDNNRFEGSVPISGAQGLTVLLISGNRFSGHFSTDICELHKLIDIDISRNRFTGEVPSCITGLTMLQKLSMQENMFTGEIPRNVSSWIDLTLLNLSYNKLSGKIPPELGNLPDLTYLDLAVNFLTGVIPPELAKLKLSQFNLSGNKLSGKVPSGFDNQIYLSALVGNPDLCSPVIKALHPCSTSGPFSSIAIIVLSTCGVLLLGSLLWFLKSKKSFFLRGKSKRSFMTTTFQRIRFKEEDVVPLLTSENLIGKGSSGQVYRVKLKTGEIVAVKKLWGGGTEKPDAKSMFKSEIETLGRIRHVNIVKLLFSCSADDFQILVFEYMENGSLGDVLHGEKCGELLDWSRRFTIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDHEFRPRVADFGLAKTLQRKLNEDGGAMSRVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDPSFGENRDIIKWLTETALSSPRGGRGNVEAQRSNVAQIVDPRLDPSSCDLKEIEKVLNVALLCTATFPINRPSMKRVVDLLKEPMACPKS 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0358 1024 Pfam Leucine rich repeat N-terminal domain 71 110 IPR013210 -
Dere13g0358 1024 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Dere13g0358 1024 Gene3D Ribonuclease Inhibitor 70 356 IPR032675 -
Dere13g0358 1024 Gene3D Ribonuclease Inhibitor 357 667 IPR032675 -
Dere13g0358 1024 Pfam Protein kinase domain 728 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0358 1024 SMART serkin_6 726 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0358 1024 Gene3D Transferase(Phosphotransferase) domain 1 805 1021 - -
Dere13g0358 1024 SUPERFAMILY L domain-like 88 351 - -
Dere13g0358 1024 Pfam Leucine rich repeat 188 246 IPR001611 GO:0005515
Dere13g0358 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Dere13g0358 1024 FunFam Leucine-rich repeat receptor-like protein kinase TDR 356 664 - -
Dere13g0358 1024 ProSiteProfiles Protein kinase domain profile. 726 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0358 1024 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 433 1016 - -
Dere13g0358 1024 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 805 1023 - -
Dere13g0358 1024 SUPERFAMILY Protein kinase-like (PK-like) 726 1015 IPR011009 -
Dere13g0358 1024 ProSitePatterns Protein kinases ATP-binding region signature. 732 755 IPR017441 GO:0005524
Dere13g0358 1024 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 110 355 - -
Dere13g0358 1024 Gene3D Phosphorylase Kinase; domain 1 702 804 - -
Dere13g0358 1024 SUPERFAMILY RNI-like 316 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0358 Dere-ChrDere13 4826012 4829177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0358 70 1017 Receptor kinase-like Gene Family AT5G65710 55.130 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere13g0358 Pkinase 2.7e-44 CL0016