Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0355 ATGAGTGTTCTATCAATCCATCCCATTTCCCAGGCGATCCACAAAATTCAGATGATGGAAATATCCTCTCCCGTGTACTTGCCTGAATTCGGAATAGAGGATCTGATATTCTTTGATCCGTACCCGATGGACAATTTCGGATACCCGATTGAAGATGGGCTTGATTTCCAATCCTTTGTGTCTGGATGTACTGGAGAGAGCTATTCCTCTTATGAGTGTCCCAACTCGAAGAGAATTCAAAGTCCTGAATCTGCTGCCCCACCAGCAACAAGACCAAGCAGGCAGCTCAAGACCAATAACAATAAGGCTTGTGCTCCCAATTCATCGTCCAAACTTATTTCTTTCGAGCACTCCAACGCGTTCTCAGTCGCTGCTAATTCCCGCCAATTTCACAATATAGATTCCAATGCGAAGCTCGAAACCCTGAATGAAAACGTACTGGATTTTGCATCTTTGAGTCGTCAAGGTGCATACAATTACGAGGACACAAGTTTCGTACGATGTGAACCGACGAACAAGGCAGGCACCGTGACCAGAAATGCAGTCCAAGCTCAAGACCATGTCATGGCCGAAAGAAAACGAAGGGAAAAACTCAACCAGAAGTTCATTGCTCTTTCCTCCGTTATTCCTGGCCTCAAGAAGATGGACAAGGCGTCAGTTTTGGGAGATGCTGTAAAGTATGTGAAACTTCTGCAGGAACGCGAGAAGATTCTGGAAGAACAGCTGGCCATGAAAACAAAGGAATCAGCCGTCTCACTGAGGAGAACTATTATCTCTACGGACAATGACAGCTCCACGTCCAATGAAAATTCTGGCGGCCGCTCTGACCGACCACTAGAAGAAATCGAAGCGAGAGTTTTCGCAGATGGACGAGGAACACTGCATGACAGCAACGGATTTAGTAAGAAGCCTAAGGAAGGCATTGGGGCATAG 933 0.463 MSVLSIHPISQAIHKIQMMEISSPVYLPEFGIEDLIFFDPYPMDNFGYPIEDGLDFQSFVSGCTGESYSSYECPNSKRIQSPESAAPPATRPSRQLKTNNNKACAPNSSSKLISFEHSNAFSVAANSRQFHNIDSNAKLETLNENVLDFASLSRQGAYNYEDTSFVRCEPTNKAGTVTRNAVQAQDHVMAERKRREKLNQKFIALSSVIPGLKKMDKASVLGDAVKYVKLLQEREKILEEQLAMKTKESAVSLRRTIISTDNDSSTSNENSGGRSDRPLEEIEARVFADGRGTLHDSNGFSKKPKEGIGA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0355 310 MobiDBLite consensus disorder prediction 73 105 - -
Dere13g0355 310 MobiDBLite consensus disorder prediction 274 310 - -
Dere13g0355 310 Coils Coil 228 248 - -
Dere13g0355 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Dere13g0355 310 Gene3D - 175 248 IPR036638 GO:0046983
Dere13g0355 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 251 IPR036638 GO:0046983
Dere13g0355 310 SMART finulus 188 237 IPR011598 GO:0046983
Dere13g0355 310 PANTHER BHLH TRANSCRIPTION FACTOR 60 286 - -
Dere13g0355 310 MobiDBLite consensus disorder prediction 256 273 - -
Dere13g0355 310 Pfam Helix-loop-helix DNA-binding domain 185 232 IPR011598 GO:0046983
Dere13g0355 310 Coils Coil 181 201 - -
Dere13g0355 310 MobiDBLite consensus disorder prediction 256 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0355 Dere-ChrDere13 4795789 4797900 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0355 81 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.566 8.19e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g0355 HLH 1.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0355 13 4795789 4797900 Dere13g0355 13 4795789 4797900 ECH