Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0351 ATGGCTGACTACTATGAATTATTGGGACTAAATAACGGGGGTCCAGGCGCGACATGCAAGGGGCTATATAAGATCCAAGGGGAGGGGCGTCCCATGATTGGGACTGGTGATAGCTCTGAAACGAGTCTCATTCTTCCATCGTTTCACGGGGTAATAGTAACACTGTTTTCAAGTTTCCTGTTTGGCATGCAACTCCAGTCCTCCAGTGTTGGCCCAGAAATGGAAGATTATAATTTCTTTCCTATGCAGTGCCACCTGAATTTTAATGACGATGACCCCTTTATTGCACATGACATAGCCAGTGTCCTGCAGGGAAAGTACTTTCAGCCATCCTTATCATGTGAGAGCCACTCGTCCTACAACACTTGCGCTTCAAAAACTCTCAGCAATTCTTCCACCGCCGAAACTAGTCTTGAGAGGCGTTCCAAGCATATCAAATCCACTAGTTGGAACTCCTCCATCTCTGACCGTTCTTCTTCTTCTCAACTTCTGTCCTTTGATAACTCTAATTCCTCCCCACCTAAGAGTATTAACCACTTTTACGGTTTTGACTCTGCCTTGAACCCAACAAAGAAGGAGGTGCTGTCTCATCAATCCCCAGATATGCAGTGCTTCTCAGCTCAACCCCCCGAGGGATCCTCCGAGTACCACAACTTTGAACCAAAATCCACTCAAGGGATCAAGAGGCCTCTCCCTCACGCTCGTGACCACATAATGGCTGAGAGAAAACGAAGAGAAAAGCTCAGCCAGAGCTTCATTGCTCTTTCAGCCCTTGTTCCTGGCCTCAAGAAGGTATACATATGCTACCTACTTTTCATTCTTAACCAATGGAATGTAACACATTCTGGAAAGCAAAATAAGTTTGACATTGTTATGCAGATGGACAAGGCTTCGGTGCTTGGGGACGCTATCAAGTACGTGAAAGAGCTGAAGGAGCGATTGACATTGCTGGAAGAACGGAGCAAGAAAAGAAGAGTTGAATCAGTGGTGATGGTGAAGAAATCGCAAGTCTGTGGGGAGGATGATTCATCCTCGAGTGAGGAGAGCTTAAACGAAGTTTGTGAAGCAGAAGCACTTCCGGAAGTGGAAGCCAAAGTGTCAGAAAGGGACATGGGGGAAGATTACAACTTGACAACGAAGGATCTCGTAAAGAACCTACGAGTGGCTATATTAGGTGTCTATGATATCAACGTGGCCTGA 1200 0.4608 MADYYELLGLNNGGPGATCKGLYKIQGEGRPMIGTGDSSETSLILPSFHGVIVTLFSSFLFGMQLQSSSVGPEMEDYNFFPMQCHLNFNDDDPFIAHDIASVLQGKYFQPSLSCESHSSYNTCASKTLSNSSTAETSLERRSKHIKSTSWNSSISDRSSSSQLLSFDNSNSSPPKSINHFYGFDSALNPTKKEVLSHQSPDMQCFSAQPPEGSSEYHNFEPKSTQGIKRPLPHARDHIMAERKRREKLSQSFIALSALVPGLKKVYICYLLFILNQWNVTHSGKQNKFDIVMQMDKASVLGDAIKYVKELKERLTLLEERSKKRRVESVVMVKKSQVCGEDDSSSSEESLNEVCEAEALPEVEAKVSERDMGEDYNLTTKDLVKNLRVAILGVYDINVA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0351 399 SMART finulus 238 316 IPR011598 GO:0046983
Dere13g0351 399 MobiDBLite consensus disorder prediction 147 171 - -
Dere13g0351 399 MobiDBLite consensus disorder prediction 131 171 - -
Dere13g0351 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 310 IPR011598 GO:0046983
Dere13g0351 399 PANTHER BHLH TRANSCRIPTION FACTOR 110 370 - -
Dere13g0351 399 Pfam Helix-loop-helix DNA-binding domain 237 310 IPR011598 GO:0046983
Dere13g0351 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 328 IPR036638 GO:0046983
Dere13g0351 399 Coils Coil 300 327 - -
Dere13g0351 399 Gene3D - 232 326 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0351 Dere-ChrDere13 4760858 4762702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0351 99 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.401 1.90e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g0351 HLH 7.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0550 09 8379750 8381797 Dere13g0351 13 4760858 4762702 CCT
Dere13g0351 13 4760858 4762702 Dere13g0351 13 4760858 4762702 ECH