Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0345 ATGGGTGCAGAGATTGGCCTTCTCTCCATAACCCAGATCCAAAAATTGTCACAATCCCAACACCACCATCCAAATCAGCTCCTTCAACCCCACCCTCCCTCAAACCCTAGCTCTCCCTCCACCTGGATCATGTGGAACCCTAGGGAACTCCAGGAAGACGATGACTCGTGGGAGGTCAGAGCCTTTGCACAGGACACCACAAGCATCATGGGCACCACTTGGCCTCCCAGGTCCTACACTTGCACCTTCTGTCGAAGGGAGTTCCGTTCAGCCCAAGCTCTCGGCGGCCACATGAACGTGCACCGCCGTGACCGTGCTCGTCTCCACCACGAGCAGCCACCGCCTGCTGTGTCCGTCAACAACAACCTAATCTCACCTCATCAAGAGCTTGTTGCAAATAACGGCGGATTATGCCTTCTCTACCATTTACCAAGCCCTGATGGGATAGCGAACTTCTCTAGTACCAGTACTAGTACTAGTGCTAATCCTAATCTTGCTTCTACTTTGAATGCATGTGGAGAATCAGTATCAGCCTCCACGCTTCTCTCCATTATGCCCTACCCACCAAACAACTTGGTGTCAACTAGCTCCCCCTCCCTTGATCTTCAAGTGGAGCAGCCAGGATTCATCAATTCTTCTTACTGTGATTCTAGCAGAGCGGAAGAAACCACGACCTCCTATGCCGGTAACGAGCACGAAGAGCTTGATCTAGAGCTCCGACTGGGGCACAGACCTACACCCATCTGA 747 0.5234 MGAEIGLLSITQIQKLSQSQHHHPNQLLQPHPPSNPSSPSTWIMWNPRELQEDDDSWEVRAFAQDTTSIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHEQPPPAVSVNNNLISPHQELVANNGGLCLLYHLPSPDGIANFSSTSTSTSANPNLASTLNACGESVSASTLLSIMPYPPNNLVSTSSPSLDLQVEQPGFINSSYCDSSRAEETTTSYAGNEHEELDLELRLGHRPTPI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0345 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Dere13g0345 248 MobiDBLite consensus disorder prediction 16 39 - -
Dere13g0345 248 PANTHER OS07G0101800 PROTEIN 51 245 - -
Dere13g0345 248 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Dere13g0345 248 SMART c2h2final6 79 101 IPR013087 -
Dere13g0345 248 SUPERFAMILY beta-beta-alpha zinc fingers 76 106 IPR036236 -
Dere13g0345 248 Gene3D Classic Zinc Finger 65 128 - -
Dere13g0345 248 Pfam C2H2-type zinc finger 79 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0345 Dere-ChrDere13 4682334 4683080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0345 44 189 C2H2 Transcription Factor Family AT4G17810 45.833 7.00e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g0345 zf-C2H2_6 5.2e-06 CL0361