Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0341 ATGGATTCACGGGAACCGCCTCAGCGTCCACCACCGCCGCAACTACAATCGATGACACAACCTCAACCGCCGTCAGCGGCCCCAAACATGATGATAGGACCCACTTCCTATGCTTCATCTATGGCCAACCAGAACACATCTCCCATGATCAGCCCCAATTCGACGGCCACGATGATGGCCTCTGCTACCGCACGATTCCCCTTCAACACAGTGGTTCCACAACCCCCTGCTCCGTCTAAGCCTTTGGAACATCTTAACAACAATACTAGTCCTTACGATGGGTCGTCGTCCGCGATGAGGTCATGTGGGTTTAACATTGATTCTACGAAGAAGAAGAGAGGCCGGCCGAGGAAATATTCGCCGGATGGTAACATTGCTTTGGGTTTGGCTCCCACGCCCATGTCCTCTTCCGCCGGTCATGGAGATTCGAGTGGTACGCCATCTACGGAACCTCAGACAAAGAAGCATAGGGGAAGGCCGCCGGGGTCTGGAAAGAAGCAGCTGGATGCTCTTGGAGCTGGCGGTATTGGTTTTACTCCGCACGTGATTTTGGTAAAAACCGGTGAGGACATTGCAGCAAAGGTCATGGCCTTTTCTCAGCAAGGTCCTAGGACAGTTTGTATTCTTTCTGCAAATGGTGCAGTCGGCAATGTCTCCCTTCAACAGGCTGCAACGTCTGGTGGTACTGTGCAATATGAGGGCCGATTTGAGATTATTTCTCTGTCAGGTTCTTTCCTGCCATATGATGATAATGGCGGTCGTACCAAAATAGGTGGTTTGAGTGTGTCTCTTGCAGGGTCTGATGGTAAAGTTCTAGGTGGTGGAGTTGCTGGAATGCTAATTGCTGCATCCCCAGTGCAGGTCATTGTGGGTAGCTTTATTGTGGATGGCAAAAAGTCAAGTTCAAATGTTCTGAAATCAGGGGCTTCTTCGGCGCCAGCCTCCCAAATTTTGAATTTTGGTTCACCGATGACTCCTACCAGCCCTACCTCTCAAGGCCCTTCGTCTGAGTCCTCTGATGACAATGACAATAATAGTGCTTTTAATAGGGGGCCTGGACTCTACAATAATGCTAGTCAGCCCATTCATAATATGCAGATGTATCATCCTCAACTATGGGCTGGTCAAACCCAGCAGTGA 1140 0.5018 MDSREPPQRPPPPQLQSMTQPQPPSAAPNMMIGPTSYASSMANQNTSPMISPNSTATMMASATARFPFNTVVPQPPAPSKPLEHLNNNTSPYDGSSSAMRSCGFNIDSTKKKRGRPRKYSPDGNIALGLAPTPMSSSAGHGDSSGTPSTEPQTKKHRGRPPGSGKKQLDALGAGGIGFTPHVILVKTGEDIAAKVMAFSQQGPRTVCILSANGAVGNVSLQQAATSGGTVQYEGRFEIISLSGSFLPYDDNGGRTKIGGLSVSLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIVDGKKSSSNVLKSGASSAPASQILNFGSPMTPTSPTSQGPSSESSDDNDNNSAFNRGPGLYNNASQPIHNMQMYHPQLWAGQTQQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0341 379 Gene3D - 180 306 - -
Dere13g0341 379 MobiDBLite consensus disorder prediction 315 361 - -
Dere13g0341 379 SUPERFAMILY AF0104/ALDC/Ptd012-like 178 294 - -
Dere13g0341 379 MobiDBLite consensus disorder prediction 1 54 - -
Dere13g0341 379 MobiDBLite consensus disorder prediction 136 151 - -
Dere13g0341 379 MobiDBLite consensus disorder prediction 81 104 - -
Dere13g0341 379 MobiDBLite consensus disorder prediction 1 19 - -
Dere13g0341 379 MobiDBLite consensus disorder prediction 69 171 - -
Dere13g0341 379 SMART AT_hook_2 154 166 IPR017956 GO:0003677
Dere13g0341 379 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Dere13g0341 379 ProSiteProfiles PPC domain profile profile. 174 314 IPR005175 -
Dere13g0341 379 CDD DUF296 179 293 IPR005175 -
Dere13g0341 379 MobiDBLite consensus disorder prediction 32 54 - -
Dere13g0341 379 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 346 IPR039605 GO:0003680
Dere13g0341 379 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 293 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0341 Dere-ChrDere13 4633700 4638535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0341 80 379 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.708 2.43e-82 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0538 09 8246704 8250969 Dere13g0341 13 4633700 4638535 CCT