Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0337 ATGCCAGTTCCACTTGCCCCCTACCCGACACCCCAAGCTCCATATACGCCTCCAGCTAATGGAGGTGCACAGAGTCAGCTTGTGTGTTGTGGGTGTAGAAACCTTCTGCTCTATCCAGGAGGAGCAACATCTGTGTGCTGTGCCGTTTGCAATGCAGTCACTGCGGTGCCTCCTCCTGGCACAGAAATGGCCCAGTTGGTTTGTGGAGCCTGCCACACCTTACTCATGTACATCCGTGGGGCCACAAGTGTGCAATGCTCTTGCTGTCACACTGTCAATCTAGCTCTGGAAGCAAATCAGTTGGCACATGTTAACTGTGGCAACTGTAGAATGCTACTGATGTACCAATATGGAGCAAGATCGGTAAAATGTGCAGTCTGCAATTTTGTAACATCAGTTGGGGCCTCAGCAAGCACAACTGAGCAAAAGTTCAGCACCTAA 441 0.5057 MPVPLAPYPTPQAPYTPPANGGAQSQLVCCGCRNLLLYPGGATSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHTVNLALEANQLAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0337 146 NCBIfam zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Dere13g0337 146 NCBIfam zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Dere13g0337 146 NCBIfam zinc finger domain, LSD1 subclass 103 133 IPR005735 -
Dere13g0337 146 PANTHER PROTEIN LSD1 14 56 IPR040319 -
Dere13g0337 146 Pfam LSD1 zinc finger 68 92 IPR005735 -
Dere13g0337 146 Pfam LSD1 zinc finger 29 53 IPR005735 -
Dere13g0337 146 Pfam LSD1 zinc finger 106 130 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0337 Dere-ChrDere13 4581990 4583482 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Dere13g0337 zf-LSD1 1.3e-08 No_clan