Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0334 ATGGGTTGCACTGTAAGGGAAAAGCACTTCCGAGCGAATCGGAGACCTCGATCAACCAAAGCCGATATGGATTCTTGCTGTTATATAGACAATGCTTCCATCTCCAAATCTATACTGGAATCGGGCCTCAAGCCGTTGAAAAGTCATCTGACTCCCAGCGATTCTTCTCAAAATCCAAATTCCAACTCTAACCCTAACCCTAATTCTACCCTTAATATCGAGGAAACTGGCTGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTTTGTTGAAAAACTTAGAATATTTATATAATGAAGCTGTATCAAAGCTTGTTACATTGGGCTACGACGAGGACGTTGCTATCAAAGCAATATTGCGAAATGGGCACTGCTATGGTGCAATGGATGTGTTAACCAATATATTGCATAACTCATTGGCTTATTTGAACAGTAATTGTGGCAGTACTAGTAGTAGTAGTAGTGGCAATGCCAATTTGGATGAGTCCGATCCTGTTTTCTCAGACTTGAGGCAGTTGGAGGAGTACTCTGTGGCAGGTATGGTCTCTTTGCTGCAACAAGTCAGGCCGCATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCGAGCACTATGGAAATTCCAGTGCTTCCTGCCCCAGGTAGTGGTTGTCCAGCTCCTAGTGCCGCTGAGACTGTTAACAATTCAGCTGGTGTTTTGGCCCCTGCTTTATGTAGGTTTCATGGCGGTTGGGGATTTGGAAATGGAGGAGGCTCAGATCTCCCGGTGAATGGGTTCTTCTCTTATGCTGCAGATATGACTTTACAGAGAGATATTGAATTGCCCAAGAGGTTTAACCTTTCTCCTTCACTGAAGTCTTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAACTGCAGACGCATGCTAAGGTCTCTCCCAGCAATAGCACTTTGTCAAGTTTGGATTCTTCAGCTGTATCTGGGACTGATGTCCCAGCTGAGCAGTCTGGGGATTCTCAGAATCTCAATAATCAAGATGCTGTGAACTCTGTGCTGAGTAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGTTTGTGACAGAAGATCAGAAAGATGAGGTGATAGTCACTCTGTTTCATCAGATTAAAGATCTTGAGAAACAGGTAAAGGAACGGAAAGAGTGGGCCCATCAGAAGGCAATGCAAGCTGCAAGAAAGCTAAGCAATGATCTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCTCTTGAGGACACAACCATGAAAAGACTCTCAGAGATGGAGAATGCTTTAAGAAAGGCCAGTGGTCAAGTGGACCGGGCAAATGCAGCTGTGAGACGGCTTGAGACAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCTTCGGAATCAGTCACGACTTGCTTGCAAGTCGCAAAGAGGGAGAAAAAGTGTTTGAAGAGGCTTCTAGCATGGGAAAAACAGAAAGCTCAGCTGCAGCAGGAGATTTCAGGTGAAAAAGAGAAGATATCTGAGATACAGGAAGAATTGGTCCGGATTAGACAGCGTCAGAAAGATGCAGAGATCAAGTGGAGAGAGGAGTTGAAGGCTAAGGAGGAAGCCTTAGGACTAGTTGAGGAGGAGCGACGCTCTAAGGAAGCGGCTGAGGCTAATAACAAGAGGAAGTTGGAGGCTTTGCGCCTAAAGATAGAGATAGATTTCCAACGCCACAAGGATGATCTCCTAAGACTTGAGCAGGAGCTTTCACGCTTAAAAGAATCTGCTCAGTCTGCCGAGTTTAATCACCAATCAGATATTTCACCTGCTAGTGAGTCTGAAGGTGTAAAGCCCCAAAGAGAGACAATTGCTAAGCTGCTTCAAGAATTAGATAAACTGGAGGATTATTCAGATAAAGAAGTCAACTGTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGGGGAAAGGGTAAAGCTGCTTGTCCTTGCTGCCAGGTTCCAATTGAGCAAAAGATCCGCGTTTTTGGGGCAAGTTCTTAG 2184 0.4414 MGCTVREKHFRANRRPRSTKADMDSCCYIDNASISKSILESGLKPLKSHLTPSDSSQNPNSNSNPNPNSTLNIEETGWGYCTEEQLEEILLKNLEYLYNEAVSKLVTLGYDEDVAIKAILRNGHCYGAMDVLTNILHNSLAYLNSNCGSTSSSSSGNANLDESDPVFSDLRQLEEYSVAGMVSLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVLPAPGSGCPAPSAAETVNNSAGVLAPALCRFHGGWGFGNGGGSDLPVNGFFSYAADMTLQRDIELPKRFNLSPSLKSLLKRNVAMFAAGFRANSKQLQTHAKVSPSNSTLSSLDSSAVSGTDVPAEQSGDSQNLNNQDAVNSVLSKFRDLNLDENLEFVTEDQKDEVIVTLFHQIKDLEKQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCLQVAKREKKCLKRLLAWEKQKAQLQQEISGEKEKISEIQEELVRIRQRQKDAEIKWREELKAKEEALGLVEEERRSKEAAEANNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKESAQSAEFNHQSDISPASESEGVKPQRETIAKLLQELDKLEDYSDKEVNCDRECIICMKDEVSVVFLPCAHQVMCASCSDEYGGKGKAACPCCQVPIEQKIRVFGASS 727
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0334 727 CDD RING-HC_MIP1-like 670 722 - -
Dere13g0334 727 Coils Coil 453 494 - -
Dere13g0334 727 MobiDBLite consensus disorder prediction 624 638 - -
Dere13g0334 727 Pfam Family of unknown function (DUF6592) 93 212 IPR046527 -
Dere13g0334 727 SUPERFAMILY RING/U-box 662 720 - -
Dere13g0334 727 PANTHER OS05G0141500 PROTEIN 1 722 IPR046934 -
Dere13g0334 727 MobiDBLite consensus disorder prediction 47 69 - -
Dere13g0334 727 Coils Coil 565 592 - -
Dere13g0334 727 ProSiteProfiles Zinc finger RING-type profile. 673 713 IPR001841 -
Dere13g0334 727 Coils Coil 601 628 - -
Dere13g0334 727 MobiDBLite consensus disorder prediction 624 644 - -
Dere13g0334 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 724 IPR013083 -
Dere13g0334 727 SMART ring_2 673 712 IPR001841 -
Dere13g0334 727 MobiDBLite consensus disorder prediction 48 69 - -
Dere13g0334 727 MobiDBLite consensus disorder prediction 315 354 - -
Dere13g0334 727 Pfam Zinc finger, C3HC4 type (RING finger) 670 718 - -
Dere13g0334 727 Coils Coil 509 557 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere13g0334 Dere-ChrDere13 4549623 4553805 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0334 538 723 C3H Transcription Factor Family AT1G73950 24.365 1.18e-06 49.7