Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere13g0334 | ATGGGTTGCACTGTAAGGGAAAAGCACTTCCGAGCGAATCGGAGACCTCGATCAACCAAAGCCGATATGGATTCTTGCTGTTATATAGACAATGCTTCCATCTCCAAATCTATACTGGAATCGGGCCTCAAGCCGTTGAAAAGTCATCTGACTCCCAGCGATTCTTCTCAAAATCCAAATTCCAACTCTAACCCTAACCCTAATTCTACCCTTAATATCGAGGAAACTGGCTGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTTTGTTGAAAAACTTAGAATATTTATATAATGAAGCTGTATCAAAGCTTGTTACATTGGGCTACGACGAGGACGTTGCTATCAAAGCAATATTGCGAAATGGGCACTGCTATGGTGCAATGGATGTGTTAACCAATATATTGCATAACTCATTGGCTTATTTGAACAGTAATTGTGGCAGTACTAGTAGTAGTAGTAGTGGCAATGCCAATTTGGATGAGTCCGATCCTGTTTTCTCAGACTTGAGGCAGTTGGAGGAGTACTCTGTGGCAGGTATGGTCTCTTTGCTGCAACAAGTCAGGCCGCATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCGAGCACTATGGAAATTCCAGTGCTTCCTGCCCCAGGTAGTGGTTGTCCAGCTCCTAGTGCCGCTGAGACTGTTAACAATTCAGCTGGTGTTTTGGCCCCTGCTTTATGTAGGTTTCATGGCGGTTGGGGATTTGGAAATGGAGGAGGCTCAGATCTCCCGGTGAATGGGTTCTTCTCTTATGCTGCAGATATGACTTTACAGAGAGATATTGAATTGCCCAAGAGGTTTAACCTTTCTCCTTCACTGAAGTCTTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAACTGCAGACGCATGCTAAGGTCTCTCCCAGCAATAGCACTTTGTCAAGTTTGGATTCTTCAGCTGTATCTGGGACTGATGTCCCAGCTGAGCAGTCTGGGGATTCTCAGAATCTCAATAATCAAGATGCTGTGAACTCTGTGCTGAGTAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGTTTGTGACAGAAGATCAGAAAGATGAGGTGATAGTCACTCTGTTTCATCAGATTAAAGATCTTGAGAAACAGGTAAAGGAACGGAAAGAGTGGGCCCATCAGAAGGCAATGCAAGCTGCAAGAAAGCTAAGCAATGATCTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCTCTTGAGGACACAACCATGAAAAGACTCTCAGAGATGGAGAATGCTTTAAGAAAGGCCAGTGGTCAAGTGGACCGGGCAAATGCAGCTGTGAGACGGCTTGAGACAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCTTCGGAATCAGTCACGACTTGCTTGCAAGTCGCAAAGAGGGAGAAAAAGTGTTTGAAGAGGCTTCTAGCATGGGAAAAACAGAAAGCTCAGCTGCAGCAGGAGATTTCAGGTGAAAAAGAGAAGATATCTGAGATACAGGAAGAATTGGTCCGGATTAGACAGCGTCAGAAAGATGCAGAGATCAAGTGGAGAGAGGAGTTGAAGGCTAAGGAGGAAGCCTTAGGACTAGTTGAGGAGGAGCGACGCTCTAAGGAAGCGGCTGAGGCTAATAACAAGAGGAAGTTGGAGGCTTTGCGCCTAAAGATAGAGATAGATTTCCAACGCCACAAGGATGATCTCCTAAGACTTGAGCAGGAGCTTTCACGCTTAAAAGAATCTGCTCAGTCTGCCGAGTTTAATCACCAATCAGATATTTCACCTGCTAGTGAGTCTGAAGGTGTAAAGCCCCAAAGAGAGACAATTGCTAAGCTGCTTCAAGAATTAGATAAACTGGAGGATTATTCAGATAAAGAAGTCAACTGTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGGGGAAAGGGTAAAGCTGCTTGTCCTTGCTGCCAGGTTCCAATTGAGCAAAAGATCCGCGTTTTTGGGGCAAGTTCTTAG | 2184 | 0.4414 | MGCTVREKHFRANRRPRSTKADMDSCCYIDNASISKSILESGLKPLKSHLTPSDSSQNPNSNSNPNPNSTLNIEETGWGYCTEEQLEEILLKNLEYLYNEAVSKLVTLGYDEDVAIKAILRNGHCYGAMDVLTNILHNSLAYLNSNCGSTSSSSSGNANLDESDPVFSDLRQLEEYSVAGMVSLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVLPAPGSGCPAPSAAETVNNSAGVLAPALCRFHGGWGFGNGGGSDLPVNGFFSYAADMTLQRDIELPKRFNLSPSLKSLLKRNVAMFAAGFRANSKQLQTHAKVSPSNSTLSSLDSSAVSGTDVPAEQSGDSQNLNNQDAVNSVLSKFRDLNLDENLEFVTEDQKDEVIVTLFHQIKDLEKQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCLQVAKREKKCLKRLLAWEKQKAQLQQEISGEKEKISEIQEELVRIRQRQKDAEIKWREELKAKEEALGLVEEERRSKEAAEANNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKESAQSAEFNHQSDISPASESEGVKPQRETIAKLLQELDKLEDYSDKEVNCDRECIICMKDEVSVVFLPCAHQVMCASCSDEYGGKGKAACPCCQVPIEQKIRVFGASS | 727 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere13g0334 | 727 | CDD | RING-HC_MIP1-like | 670 | 722 | - | - | |
| Dere13g0334 | 727 | Coils | Coil | 453 | 494 | - | - | |
| Dere13g0334 | 727 | MobiDBLite | consensus disorder prediction | 624 | 638 | - | - | |
| Dere13g0334 | 727 | Pfam | Family of unknown function (DUF6592) | 93 | 212 | IPR046527 | - | |
| Dere13g0334 | 727 | SUPERFAMILY | RING/U-box | 662 | 720 | - | - | |
| Dere13g0334 | 727 | PANTHER | OS05G0141500 PROTEIN | 1 | 722 | IPR046934 | - | |
| Dere13g0334 | 727 | MobiDBLite | consensus disorder prediction | 47 | 69 | - | - | |
| Dere13g0334 | 727 | Coils | Coil | 565 | 592 | - | - | |
| Dere13g0334 | 727 | ProSiteProfiles | Zinc finger RING-type profile. | 673 | 713 | IPR001841 | - | |
| Dere13g0334 | 727 | Coils | Coil | 601 | 628 | - | - | |
| Dere13g0334 | 727 | MobiDBLite | consensus disorder prediction | 624 | 644 | - | - | |
| Dere13g0334 | 727 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 648 | 724 | IPR013083 | - | |
| Dere13g0334 | 727 | SMART | ring_2 | 673 | 712 | IPR001841 | - | |
| Dere13g0334 | 727 | MobiDBLite | consensus disorder prediction | 48 | 69 | - | - | |
| Dere13g0334 | 727 | MobiDBLite | consensus disorder prediction | 315 | 354 | - | - | |
| Dere13g0334 | 727 | Pfam | Zinc finger, C3HC4 type (RING finger) | 670 | 718 | - | - | |
| Dere13g0334 | 727 | Coils | Coil | 509 | 557 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere13g0334 | Dere-ChrDere13 | 4549623 | 4553805 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere13g0334 | 538 | 723 | C3H Transcription Factor Family | AT1G73950 | 24.365 | 1.18e-06 | 49.7 |