Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0325 ATGGGTTGCCTACACTCCAAAACCACCCATCTCAACCCTCGTGAAGATCCACCCGACTTCCCCGACTCCAATAAACCCGATCCAGCTAATGGGGATGATGTTGGTGATGAATGGCAAGTTGCAGCATTTAAAAAATACGGTCTGAATGAACTGCGAAGGGCCACAAACGAGTTCAGCACAGATTGCATTGTGTCAGAGAGTGGTGAGAAAGCTCCCAATGTTGTCTACAGGGGGAAGCTCGACAACAATCGATCCGTCGCTGTTAAACGCTTCTCCAAACAGTCCTGGCCTGATGCCAAACAATTTTTGGCAGAGGCAACTCGAGTTGGGAAGCTGAGGCACAAGAGACTGGTGAACCTAATTGGTTGTTGTACTGAAGGAGATGAACGGCTCTTGGTGGCTGAATACATGCCAAATGATAATTTGTCCAACCTCCTTTTTCATTGTACTACTCAATATACTCCTTTAATCATTCCAACTTGGGACAAGCAGCCATTACCATGGGAAATGCGAGTTAGAGTTGCATACCATGTAGCACAGGCACTTGAACATTGTAGGATGGAAAATCGTAAAATATATCATGACTTGAATGCATACAGGATTCTTTTTGATGAGGACGGTGATCCCCGCTTGTCAAGTTTCGGGCTTATGAAAAATAGTCGAGATGGAAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAGTTCATGCGAACAGGCAGGATTATCCCAGAGAGCGTGATTTACAGTTATGGAACAGTTCTTTTGGATCTTTTAACTGGCAAGCATATTCCTCCAAGCCAAGCTCTGGATCTGATTAGGAGAAAGAAGGCGTTGTTGTTGATGGACTCATCCCTAGAGGGGCAATATGCAAATGATGATGCTACCAAGTTGGCTAAACTTGCTTCAAAATGTCTTCAGTTTGAGGCTAGAGAAAGACCAGATATTCAGTTTCTTCTTACTTCTGTTGCAACTCTTCAAAAGCAGAAAGAGGTAGCATCTCATGTGTTGATGGGCCTTACTAGGAATACAACTGTGCTGCCGACCATGCTTTCTCCTCTGGGAAAGGCTTGCGCAAGGATGGATCTTACCGCTGTGCATGACATTTTGTTAAAAACAGGTTACAGAGATGAAGAAGGTGCAGAAAATGAGCTTTCGTTCCAAGAGTGGACACAACAAGTGCAAGATATTCTCAACACAAAGAAATTTGGAGATATTGCATTTAGAGACAAGGATTTCAAAAATGCAATTGATTATTACTCTAAGTTGGTGGTTATGATGTCAGCGCCTTCAGCAACTGTGTTTGCAAGAAGAGCTTTCTCGTACTTGATGAATGAGCAGGCAGAACTTGCTCTAAGGGACGCCATGCAGGCACAGGTGTGCATTCCTGATTGGCCAACAGCATTCTACCTGCAAGCTCTTGGTCTGTCAAAGCTGGGAATGGAGACTGATGCACAGGACATGCTTAATGATGGGGCAGCCTTTGAAGCTAAGAGGTCTGACGGCCGGCGTCCTTAA 1521 0.4444 MGCLHSKTTHLNPREDPPDFPDSNKPDPANGDDVGDEWQVAAFKKYGLNELRRATNEFSTDCIVSESGEKAPNVVYRGKLDNNRSVAVKRFSKQSWPDAKQFLAEATRVGKLRHKRLVNLIGCCTEGDERLLVAEYMPNDNLSNLLFHCTTQYTPLIIPTWDKQPLPWEMRVRVAYHVAQALEHCRMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFMRTGRIIPESVIYSYGTVLLDLLTGKHIPPSQALDLIRRKKALLLMDSSLEGQYANDDATKLAKLASKCLQFEARERPDIQFLLTSVATLQKQKEVASHVLMGLTRNTTVLPTMLSPLGKACARMDLTAVHDILLKTGYRDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIDYYSKLVVMMSAPSATVFARRAFSYLMNEQAELALRDAMQAQVCIPDWPTAFYLQALGLSKLGMETDAQDMLNDGAAFEAKRSDGRRP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0325 506 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 33 501 IPR045845 GO:0004672|GO:0009742
Dere13g0325 506 MobiDBLite consensus disorder prediction 1 34 - -
Dere13g0325 506 ProSiteProfiles Protein kinase domain profile. 61 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0325 506 Gene3D Phosphorylase Kinase; domain 1 34 136 - -
Dere13g0325 506 FunFam probable serine/threonine-protein kinase At5g41260 138 341 - -
Dere13g0325 506 SUPERFAMILY Protein kinase-like (PK-like) 50 329 IPR011009 -
Dere13g0325 506 Gene3D Tetratricopeptide repeat domain 396 504 IPR011990 GO:0005515
Dere13g0325 506 Pfam Protein tyrosine and serine/threonine kinase 74 321 IPR001245 GO:0004672|GO:0006468
Dere13g0325 506 FunFam probable serine/threonine-protein kinase At4g35230 33 136 - -
Dere13g0325 506 FunFam probable serine/threonine-protein kinase At4g35230 396 505 - -
Dere13g0325 506 SUPERFAMILY TPR-like 397 493 IPR011990 GO:0005515
Dere13g0325 506 Gene3D Transferase(Phosphotransferase) domain 1 138 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0325 Dere-ChrDere13 4453877 4459613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0325 18 327 Glycoside Hydrolase AT3G07070 32.326 2.03e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Dere13g0325 PK_Tyr_Ser-Thr 2.9e-28 CL0016