Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0319 ATGGTTTGCACTGCTAACGATTTACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACAGCAGTTCTGTGTCAGAGATAAGAACAAAGCTCGAGGCCTTGGACTACATCGTTTCTACATTCTCTGATGAGAATGAAGCCTTGGCAGCAATCTCAAGCAGACCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTAGCAGCAGCAGCCCAGGAAGTTTCAAATTTCTTGAGAATGCTAAGGACTTGCCAACCATCATGACTTCAGACAGTCATTGCTTGAGCACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTATGCAAACCACTCTCTGAGGAAAAACTCGGGAATATCTGGCAGCATGTGGTTCACAAGGCATTCAACGTGGGGACAAGTGTCCTGTCTGAATCACTAAATCCTGTCAAAGAATCTATGGTATTGCCGCTCCAAACAGACAGTGGAGAACATGAAAGTATGAATGTAGAGAAGGTGTCTGAGTTTAGTGATAATGACAATGAGCAGTCAGCCGGAAGTGATAAATACCCAGCCCCTTCAACTCCACAATTAAAACAGGGGGCAAGGTTACTGGATGACGGAGATTGCCAAGAACAAACTAATTGTTCAACAGAAAAAGAAAGTGGGGACCATGATGGGGAATCTAAATTTGTCGAAAGTACATGTGGGGTCTTGAATATTGAAGGTACTTGTCAACCAGAAAAATCTGAAAAGCCTCTGAACTTGGAGGAAGGGAGCTCTGCAAATGATTCTAAGAGTGAGAATGCTGTTTCTCCACATCTGCATGATAGAAAGGTTCTCAGCAACGTTGATGGTGGTACTGCATCTGCAAATAAAAATGGCATTCTTAGTGATTCTTGTCAGATCAAAACTAATAAGAAGAAGGTAGACTGGACACCTCAGCTGCACAAGAAATTTGTGAAGGCAGTGGAACAATTAGGTATTGAACAAGCAATTCCTTCTCGAATACTGGAGCTGATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAGGAGGCAAATCTTGCCGAAGGAAGATCGAAGATGGTTACAAAGACCAGTTATGGCCTTCCCTCCTCCATATTATTCTAATCACACCCTATCACCAGCTCCTATGTATCCTATGTGGGGACAATCTGGCAGTCAACCAGCTGGCGTGCATATCTGGGGCTCACCTGGTCACCCGCTGTGGCAGCCTACAGAAAGTTGGTACTGGAAGCCGTATCCTAGGATACATGCTGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAAGTCCTTGTTTTTCCCACTCTCAAAAGATGCCTGGATCGCACAATGCTAATGCAGTTGATTGTAGCTCTAGCAAGTCACAAAGTTCCTGTGATTATCATCTAGCTGAGGAGGTTGTTGACAAGGTAGTGAAGGAGGGGATAAGCAAGCCATGGCTACCAATGCCAATAGGCCTCAAACCTCCATCCACTGATAGTGTGTTGGCTGAGCTCTCTAGGCAAGGCATTTCCACCATCCCTCCTCTCACCAAGCGTGCTAAATCAGAACCCCACTGA 1620 0.4549 MVCTANDLQEWKDFPKGLRVLLLDGDSSSVSEIRTKLEALDYIVSTFSDENEALAAISSRPEGFHVAIVEVSSSSSPGSFKFLENAKDLPTIMTSDSHCLSTMMKCIALGAVEFLCKPLSEEKLGNIWQHVVHKAFNVGTSVLSESLNPVKESMVLPLQTDSGEHESMNVEKVSEFSDNDNEQSAGSDKYPAPSTPQLKQGARLLDDGDCQEQTNCSTEKESGDHDGESKFVESTCGVLNIEGTCQPEKSEKPLNLEEGSSANDSKSENAVSPHLHDRKVLSNVDGGTASANKNGILSDSCQIKTNKKKVDWTPQLHKKFVKAVEQLGIEQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRQILPKEDRRWLQRPVMAFPPPYYSNHTLSPAPMYPMWGQSGSQPAGVHIWGSPGHPLWQPTESWYWKPYPRIHADAWGCPVLPPPQSPCFSHSQKMPGSHNANAVDCSSSKSQSSCDYHLAEEVVDKVVKEGISKPWLPMPIGLKPPSTDSVLAELSRQGISTIPPLTKRAKSEPH 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0319 539 MobiDBLite consensus disorder prediction 242 273 - -
Dere13g0319 539 MobiDBLite consensus disorder prediction 171 230 - -
Dere13g0319 539 SUPERFAMILY Homeodomain-like 306 363 IPR009057 -
Dere13g0319 539 SMART REC_2 18 128 IPR001789 GO:0000160
Dere13g0319 539 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 530 IPR044825 GO:0003700|GO:0045893
Dere13g0319 539 NCBIfam myb-like DNA-binding domain, SHAQKYF class 307 361 IPR006447 GO:0003677
Dere13g0319 539 SUPERFAMILY CheY-like 16 134 IPR011006 -
Dere13g0319 539 Gene3D - 18 138 - -
Dere13g0319 539 MobiDBLite consensus disorder prediction 179 194 - -
Dere13g0319 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 304 363 IPR017930 -
Dere13g0319 539 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Dere13g0319 539 FunFam Two-component response regulator-like APRR2 17 143 - -
Dere13g0319 539 FunFam Two-component response regulator 304 366 - -
Dere13g0319 539 Pfam Myb-like DNA-binding domain 310 359 IPR001005 -
Dere13g0319 539 Gene3D - 304 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0319 Dere-ChrDere13 4394958 4399780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0319 1 528 Response Regulator Gene Family AT4G18020 50.717 1.17e-145 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere13g0319 Myb_DNA-binding 4.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0505 09 7947088 7952705 Dere13g0319 13 4394958 4399780 CCT