Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere13g0319 | ATGGTTTGCACTGCTAACGATTTACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACAGCAGTTCTGTGTCAGAGATAAGAACAAAGCTCGAGGCCTTGGACTACATCGTTTCTACATTCTCTGATGAGAATGAAGCCTTGGCAGCAATCTCAAGCAGACCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTAGCAGCAGCAGCCCAGGAAGTTTCAAATTTCTTGAGAATGCTAAGGACTTGCCAACCATCATGACTTCAGACAGTCATTGCTTGAGCACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTATGCAAACCACTCTCTGAGGAAAAACTCGGGAATATCTGGCAGCATGTGGTTCACAAGGCATTCAACGTGGGGACAAGTGTCCTGTCTGAATCACTAAATCCTGTCAAAGAATCTATGGTATTGCCGCTCCAAACAGACAGTGGAGAACATGAAAGTATGAATGTAGAGAAGGTGTCTGAGTTTAGTGATAATGACAATGAGCAGTCAGCCGGAAGTGATAAATACCCAGCCCCTTCAACTCCACAATTAAAACAGGGGGCAAGGTTACTGGATGACGGAGATTGCCAAGAACAAACTAATTGTTCAACAGAAAAAGAAAGTGGGGACCATGATGGGGAATCTAAATTTGTCGAAAGTACATGTGGGGTCTTGAATATTGAAGGTACTTGTCAACCAGAAAAATCTGAAAAGCCTCTGAACTTGGAGGAAGGGAGCTCTGCAAATGATTCTAAGAGTGAGAATGCTGTTTCTCCACATCTGCATGATAGAAAGGTTCTCAGCAACGTTGATGGTGGTACTGCATCTGCAAATAAAAATGGCATTCTTAGTGATTCTTGTCAGATCAAAACTAATAAGAAGAAGGTAGACTGGACACCTCAGCTGCACAAGAAATTTGTGAAGGCAGTGGAACAATTAGGTATTGAACAAGCAATTCCTTCTCGAATACTGGAGCTGATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAGGAGGCAAATCTTGCCGAAGGAAGATCGAAGATGGTTACAAAGACCAGTTATGGCCTTCCCTCCTCCATATTATTCTAATCACACCCTATCACCAGCTCCTATGTATCCTATGTGGGGACAATCTGGCAGTCAACCAGCTGGCGTGCATATCTGGGGCTCACCTGGTCACCCGCTGTGGCAGCCTACAGAAAGTTGGTACTGGAAGCCGTATCCTAGGATACATGCTGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAAGTCCTTGTTTTTCCCACTCTCAAAAGATGCCTGGATCGCACAATGCTAATGCAGTTGATTGTAGCTCTAGCAAGTCACAAAGTTCCTGTGATTATCATCTAGCTGAGGAGGTTGTTGACAAGGTAGTGAAGGAGGGGATAAGCAAGCCATGGCTACCAATGCCAATAGGCCTCAAACCTCCATCCACTGATAGTGTGTTGGCTGAGCTCTCTAGGCAAGGCATTTCCACCATCCCTCCTCTCACCAAGCGTGCTAAATCAGAACCCCACTGA | 1620 | 0.4549 | MVCTANDLQEWKDFPKGLRVLLLDGDSSSVSEIRTKLEALDYIVSTFSDENEALAAISSRPEGFHVAIVEVSSSSSPGSFKFLENAKDLPTIMTSDSHCLSTMMKCIALGAVEFLCKPLSEEKLGNIWQHVVHKAFNVGTSVLSESLNPVKESMVLPLQTDSGEHESMNVEKVSEFSDNDNEQSAGSDKYPAPSTPQLKQGARLLDDGDCQEQTNCSTEKESGDHDGESKFVESTCGVLNIEGTCQPEKSEKPLNLEEGSSANDSKSENAVSPHLHDRKVLSNVDGGTASANKNGILSDSCQIKTNKKKVDWTPQLHKKFVKAVEQLGIEQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRQILPKEDRRWLQRPVMAFPPPYYSNHTLSPAPMYPMWGQSGSQPAGVHIWGSPGHPLWQPTESWYWKPYPRIHADAWGCPVLPPPQSPCFSHSQKMPGSHNANAVDCSSSKSQSSCDYHLAEEVVDKVVKEGISKPWLPMPIGLKPPSTDSVLAELSRQGISTIPPLTKRAKSEPH | 539 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere13g0319 | 539 | MobiDBLite | consensus disorder prediction | 242 | 273 | - | - | |
Dere13g0319 | 539 | MobiDBLite | consensus disorder prediction | 171 | 230 | - | - | |
Dere13g0319 | 539 | SUPERFAMILY | Homeodomain-like | 306 | 363 | IPR009057 | - | |
Dere13g0319 | 539 | SMART | REC_2 | 18 | 128 | IPR001789 | GO:0000160 | |
Dere13g0319 | 539 | PANTHER | TRANSCRIPTION ACTIVATOR GLK1 | 1 | 530 | IPR044825 | GO:0003700|GO:0045893 | |
Dere13g0319 | 539 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 307 | 361 | IPR006447 | GO:0003677 | |
Dere13g0319 | 539 | SUPERFAMILY | CheY-like | 16 | 134 | IPR011006 | - | |
Dere13g0319 | 539 | Gene3D | - | 18 | 138 | - | - | |
Dere13g0319 | 539 | MobiDBLite | consensus disorder prediction | 179 | 194 | - | - | |
Dere13g0319 | 539 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 304 | 363 | IPR017930 | - | |
Dere13g0319 | 539 | ProSiteProfiles | Response regulatory domain profile. | 19 | 132 | IPR001789 | GO:0000160 | |
Dere13g0319 | 539 | FunFam | Two-component response regulator-like APRR2 | 17 | 143 | - | - | |
Dere13g0319 | 539 | FunFam | Two-component response regulator | 304 | 366 | - | - | |
Dere13g0319 | 539 | Pfam | Myb-like DNA-binding domain | 310 | 359 | IPR001005 | - | |
Dere13g0319 | 539 | Gene3D | - | 304 | 365 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere13g0319 | Dere-ChrDere13 | 4394958 | 4399780 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere13g0319 | 1 | 528 | Response Regulator Gene Family | AT4G18020 | 50.717 | 1.17e-145 | 428 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Dere13g0319 | Myb_DNA-binding | 4.3e-08 | CL0123 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dere09g0505 | 09 | 7947088 | 7952705 | Dere13g0319 | 13 | 4394958 | 4399780 | CCT |