Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0312 ATGCACCACCATTCTCTACTTTGCATACTTTTAATTTGCTTTCGTCATATACCCTACATGGCTCTCTCTGTTTTGTGTCCTCTGCTTCTTACCACCACCCTGCTTTTCATGCAAAGTCTGGCAGATACTACGTGTTCCGATTGTTTTGTACACTCTCGGGCATCCTATTACCCAAACTCTGATCAAAATGGAACAGATGCTGGTGCATGTGGGTTTGGCTCCTTTGGTGCTACAGTCAATGGAGGAGACGTATCAGCTGCATCTAATCTTTATCGAGATGGTGTTGGCTGTGGCGCATGTTACCAGGTGAAGTGTACCAACAGTGCTTATTGCTCAGACAATGGTGTGACCATAGTTATAACTGACCAAGGGTCTGGAGATAACACAGATTTCATTCTCAGCAAACGAGCCTTCACTCGGATGGCTCAGACAAGTGATGCTGGTGCTGCTCTATTGGCCTATGGCGTAGTTGATGTTGAATACAGAAGAGTTTCATGCAGCTACCCATACAAAAACATCACTTTTAAGATACATGAAAGCAGCAGCAACCCTCATTTCTTGGCCTTTGTCATATGGTATCAACAAGGAAAGAGAGATATAACTGCTGTGCAGCTCTGCGAGACTCAGAACTTTGTCTGCAAGTTACTGAATAGGAGCACTGGGGCTGTGTGGACCACAAACTCTCCACCGAGTGGGCCTTTGTCTGTAAGGATGTTGTTTAGTGATGACGATGGAGAAGACACATGGGTTGCTCCCGTTAATAATATACCTCAAGACTGGAAGGCTGGACAAACATATGACTCTGGGGTACAAGTGAACCAATAG 825 0.4509 MHHHSLLCILLICFRHIPYMALSVLCPLLLTTTLLFMQSLADTTCSDCFVHSRASYYPNSDQNGTDAGACGFGSFGATVNGGDVSAASNLYRDGVGCGACYQVKCTNSAYCSDNGVTIVITDQGSGDNTDFILSKRAFTRMAQTSDAGAALLAYGVVDVEYRRVSCSYPYKNITFKIHESSSNPHFLAFVIWYQQGKRDITAVQLCETQNFVCKLLNRSTGAVWTTNSPPSGPLSVRMLFSDDDGEDTWVAPVNNIPQDWKAGQTYDSGVQVNQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0312 274 SMART dpbb_1 83 154 IPR007112 -
Dere13g0312 274 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Dere13g0312 274 SUPERFAMILY Barwin-like endoglucanases 36 169 IPR036908 -
Dere13g0312 274 Gene3D - 37 167 IPR036908 -
Dere13g0312 274 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Dere13g0312 274 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Dere13g0312 274 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Dere13g0312 274 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Dere13g0312 274 CDD DPBB_EXLB_N 50 166 - -
Dere13g0312 274 SUPERFAMILY PHL pollen allergen 171 268 IPR036749 -
Dere13g0312 274 Pfam Lytic transglycolase 87 161 IPR009009 -
Dere13g0312 274 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 171 IPR007112 -
Dere13g0312 274 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 268 IPR007117 -
Dere13g0312 274 Gene3D - 170 272 IPR036749 -
Dere13g0312 274 PANTHER EXPANSIN-B3 30 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0312 Dere-ChrDere13 4325349 4327677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0312 34 270 Expansin Gene Family AT4G17030 44.813 2.21e-64 200