Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0302 ATGAATGCTTTGAAAATGAATTGTTTATTCTTCAAAGAGAAATCTAAAACCAGGAGAGAATCAAAATCCGCCCCGGAATTGCAAAACGAGAGGAAGAAGAACAATCGGGCGTTGGATCGAGTATCCAGGTCGACTGGTTCGCTACCATCGCCAAGGAGCGTAACAGAATTGTACAAAGAGAAAGCGAAAGAGCACAGTTTCAGAGTTTTTAGTTTGGAAGAGCTTCGAGAGGCAACAAATGACTTCAATAGGATGCTCAAGATTGGAGAAGGTGGGTTTGGGAGCGTTTACAAAGGTACCATTAGGCCTCATAATGGACGGGGTGATCCTATCGTGGTAGCCATCAAAAAGCTTAATACGCGTGGTTTCCAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTTGGCATTGTCAACCATCCAAATCTGGTAAAACTTTTGGGATACTGCTCCGTAGATGGTGAAAGAGGTATCCAACGGTTGTTGGTGTATGAATACATGGCGCATAGGAGCCTAGAAGATCATCTTTTTAATCGGTCTTTTCCCACCTTGCCTTGGAAAACAAGATTGCAGATCATGATCGGTGCTGCCCAAGGATTAGCTTATCTGCACGAGGGATTGGAGGTTCAGGTGATATACCGAGATTTCAAAACTTCAAATGTCCTATTGGATGTGGACTTCCAGCCAAAGCTCTCAGATTTTGGTCTTGCTAGGGAAGGCCCTACAGGCGATGATACTCATGTATCTACTAGGGTGGTTGGAACGCAAGGATATGCAGCCCCAGAATATATTGAAACGGGGCATCTCAAAGTTGAGTGTGACATCTACAGTTTTGGGGTGGTACTCTATGAGATCATATCAGGCAAGCGGGCATTAGATAGAAACCGTCCAATTGCAGAACAAAAGCTTTTAAATTGGGTTAAGCAGTATCCTGCTGACACTAGTAGATTCAGCATGATCATAGACCCGCGTCTCAGAAACCATTTTTCTCCTGGTGCAGTTCGCAAAGTTGCAAAGTTGGCCGAGTCTTGCGTGAAGAAGAATCCTCAAGATAGGCCAACCATGTCTCAGATAGTGGAAACCTTGAAGCAAGCATTGCAGTATTCAGAGACCTCTGACATTTCTCAGAATGCAACTCCTGAGTCATCTCGATCTACTATGATTCGAAAAGGTAAATAA 1182 0.4391 MNALKMNCLFFKEKSKTRRESKSAPELQNERKKNNRALDRVSRSTGSLPSPRSVTELYKEKAKEHSFRVFSLEELREATNDFNRMLKIGEGGFGSVYKGTIRPHNGRGDPIVVAIKKLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEYMAHRSLEDHLFNRSFPTLPWKTRLQIMIGAAQGLAYLHEGLEVQVIYRDFKTSNVLLDVDFQPKLSDFGLAREGPTGDDTHVSTRVVGTQGYAAPEYIETGHLKVECDIYSFGVVLYEIISGKRALDRNRPIAEQKLLNWVKQYPADTSRFSMIIDPRLRNHFSPGAVRKVAKLAESCVKKNPQDRPTMSQIVETLKQALQYSETSDISQNATPESSRSTMIRKGK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0302 393 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Dere13g0302 393 PANTHER OS01G0588500 PROTEIN-RELATED 31 367 - -
Dere13g0302 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Dere13g0302 393 ProSiteProfiles Protein kinase domain profile. 82 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0302 393 MobiDBLite consensus disorder prediction 371 387 - -
Dere13g0302 393 MobiDBLite consensus disorder prediction 15 39 - -
Dere13g0302 393 Gene3D Phosphorylase Kinase; domain 1 53 167 - -
Dere13g0302 393 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 168 377 - -
Dere13g0302 393 MobiDBLite consensus disorder prediction 15 55 - -
Dere13g0302 393 Gene3D Transferase(Phosphotransferase) domain 1 168 388 - -
Dere13g0302 393 CDD STKc_IRAK 88 365 - -
Dere13g0302 393 Pfam Protein tyrosine and serine/threonine kinase 87 363 IPR001245 GO:0004672|GO:0006468
Dere13g0302 393 SUPERFAMILY Protein kinase-like (PK-like) 58 363 IPR011009 -
Dere13g0302 393 MobiDBLite consensus disorder prediction 371 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0302 Dere-ChrDere13 4188185 4190368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0302 6 363 Glycoside Hydrolase AT3G07070 42.623 6.79e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere13g0302 PK_Tyr_Ser-Thr 1.4e-46 CL0016