Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0291 ATGGCTCAAGCAAAGGTTCTATGCATCCAGATGCAACAAGAGGTTATCAGGTTCTGCAAGGTGGGGGCAAGAGTCTACTGGATTCTGTGCATGGACATCTGCCACTGCATTAGATCTAAGAAGAATGCTACAAGGTTGGGGGAAAGAGCTTCAGCGTTGAAGAATGAAGAACGCTGCTACTGGTTGGATTTTCCAAACGAGCCAATGAAGAAGAATGCTCCCTTTTTCATGGCTAATCCATCTTCCTCCGCTTCCGCTCAGGGCACCAACTCTGACGTCTCCTACTTCCCCATGCCTTTCCATCTTCAGCAATCTACGTCGGCGGCACCGCAGTACGCGGCACAGTACGCGGCGACGGTGCAAATCCACCCTCATCCCCCTCCACCTGCAGTCCCCGCTGGCGTTTTCTCTTTCCCACAGTATCAGCAGGCGCAGCAGCTGTTTCGAAGGGATGCTCAAACTATCACACCTGAGGCTCTCGAGAATGTAAAGGCGGCCATAGCTAATAGTGAGATCGAGCACAAAGCAGATACCAAAAAGAAAGCGATTCCTCGCAAAGCCGCCGGGCAAACGTGGGAGGATCCATCCCTGGCGGAGTGGCCGGAGAATGACCACCGGTTGTTTTGTGGCGATCTGGGGAACGAGGTGAACGATGATGTTCTCTCGAAAGCGTTTTCGAGATTTCCCTCGTTTAACATGGCAAGAGTTGTTAGGGATAAGCGGAGCGGGAAGACAAAAGGATATGGATTTGTTAGCTTTGCTGATATTTCTGACCTTGCTGTCGCTCTCAAAGAGATGAATGGTAAATATGTAGGAAATAGGCCAATTAAACTATGCAAAAGTAAGTGGAAGGAGAGAACAGATTATGATGCCAAGGAGAAACAAAAGAAACAATCTAGGAAGAAATTGAAACCTTCGAAGGTGGGCGTATTGCATTACTGA 942 0.4894 MAQAKVLCIQMQQEVIRFCKVGARVYWILCMDICHCIRSKKNATRLGERASALKNEERCYWLDFPNEPMKKNAPFFMANPSSSASAQGTNSDVSYFPMPFHLQQSTSAAPQYAAQYAATVQIHPHPPPPAVPAGVFSFPQYQQAQQLFRRDAQTITPEALENVKAAIANSEIEHKADTKKKAIPRKAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADISDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDAKEKQKKQSRKKLKPSKVGVLHY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0291 313 SMART rrm1_1 206 279 IPR000504 GO:0003723
Dere13g0291 313 MobiDBLite consensus disorder prediction 289 313 - -
Dere13g0291 313 FunFam RNA-binding protein 42 140 290 - -
Dere13g0291 313 MobiDBLite consensus disorder prediction 297 313 - -
Dere13g0291 313 SUPERFAMILY RNA-binding domain, RBD 188 285 IPR035979 GO:0003676
Dere13g0291 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Dere13g0291 313 CDD RRM_RBM42 199 281 IPR034215 -
Dere13g0291 313 Gene3D - 156 299 IPR012677 -
Dere13g0291 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 277 IPR000504 GO:0003723
Dere13g0291 313 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 130 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0291 Dere-ChrDere13 4107628 4109728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0291 207 285 Eukaryotic Initiation Factors Gene Family AT2G23350 37.975 2.97e-10 59.3