Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0289 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAATACACCACTTTGGCGCAATGGGCCACCAGAGAAACCAGTATTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGCACCCTTGCAAATTATACCCCATTACATGCTCGGACAGAAACTGATGATTATGAGGATCCAAGGCCTTCTAGGGCAAAGAACATATCATTAAGCAAGAACAAAGAAGTGAAATTGCTCAAACGAAAGCAGAACCATGATAATTTAGTATCTGGTTGGGTTGCTCCTGATTACAACCAGGGATTTCGCAAGTTTGTAGATGAAGACACAAGCAATAGATCAAGTTCAGGATCAGCTGTCTCTAACTCAGAGAGCTGTGCTCAATTTGCTGGAACAGATGCTAGTGACTTGACAGGTCCTGCTCAGTCAGTTGTGTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTAAGCCGTCAAAAGCCATCTCCTGTTGAGAAGCTAACAAAAGATTTATATACTATCCTTCATGAACAACAGTCCTATTTCTCTGCATCTTCTGAAGAGGACCTTCTTTTTGAAAGTGAAACGCCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGACATCCTAGCTGTATAGCTCGTGAAGAAGAATCTGAGGCTAGCTCCCTTTCAGTTGATAACAAGCAATGCCCGACCAGTGAGGCATATTCATGCTCAGGTGCCATTCATATGCATAATGATTGCACTGGCGTCAACTTTCTGTCTCAGGGAATTGAAAAAATCAAGTACACTGCTAGCCAAGGAATTCAGCAGGAGAAACTTAAAAGGGACAAGGGTCAGCCTGAAACTTTACAAATGCTTGGATATCATAATTCACCACTGTGCTTAATAGATTTAAATGATGTTGTAAACTATGAGGCGTTTATGAGGAACTTGACAAATGAGGAGCAGCAAGAATTACTGAAGTGTCTCCCAGTGGTGGATACTGCCAAACTTCCTGACAGCTTTAGAAGCATGTTCATCAGCTCTCAATTTAAGGAGAACTTAACTTACTTTCAACAGCTTCTCGGGGAAGGTGTATTTGATATCTCTTTAGCAGGGGCCAAACCTGAAGACTGCAAGAGCTTGAAACGGCTTGCACTATCTGATCTGTCACAGTCTAAATGGGTTGAACAATATGATTTACTTAAGAGATGTAAATATAGAGCTGAAAAATCTGTTGCTCTTGGATCTACTGGCACTGTGTCAAGTAATGCTGCGAATGAAAAGAGACTGCGTGACAGCCCAAAACAGAATTTTCCTGAACTGAAGACGACAGTTAGGAGCCCCAAAAGGGTGATCATGAAGGCTGGCTATGAGAGCAAGGATGTCTTTGAAGATGGCTCTTGCTTTAGTCCAAAAAGCTTATTCGCTTTGCCTGCTGATGGTAGCTCGCTTATGCTGGATTCTTTCAACTTAGTCGAGGAGAGTTCTGATCAAGATCTGCTGCTTGAAGTGCGATCTAACAGTTCTTTTCCACAAGCAGAGCTACTGTACCCAACTTTAAGCTTTGGTGCTCAAGCTAGCGCTAGTGGTAGCGCAGTGTACCCTCATCTTGCCCATTCCTGA 1623 0.4301 MVKQGPCYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDYEDPRPSRAKNISLSKNKEVKLLKRKQNHDNLVSGWVAPDYNQGFRKFVDEDTSNRSSSGSAVSNSESCAQFAGTDASDLTGPAQSVVWDAMVPSKKRTCVSRQKPSPVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSCIAREEESEASSLSVDNKQCPTSEAYSCSGAIHMHNDCTGVNFLSQGIEKIKYTASQGIQQEKLKRDKGQPETLQMLGYHNSPLCLIDLNDVVNYEAFMRNLTNEEQQELLKCLPVVDTAKLPDSFRSMFISSQFKENLTYFQQLLGEGVFDISLAGAKPEDCKSLKRLALSDLSQSKWVEQYDLLKRCKYRAEKSVALGSTGTVSSNAANEKRLRDSPKQNFPELKTTVRSPKRVIMKAGYESKDVFEDGSCFSPKSLFALPADGSSLMLDSFNLVEESSDQDLLLEVRSNSSFPQAELLYPTLSFGAQASASGSAVYPHLAHS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0289 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 404 IPR044867 -
Dere13g0289 540 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Dere13g0289 540 PANTHER OSJNBB0038F03.10 PROTEIN 7 523 IPR044589 -
Dere13g0289 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Dere13g0289 540 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Dere13g0289 540 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Dere13g0289 540 Pfam Asx homology domain 283 367 IPR028020 -
Dere13g0289 540 CDD ZnF_GATA 6 64 IPR000679 GO:0006355|GO:0043565
Dere13g0289 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Dere13g0289 540 MobiDBLite consensus disorder prediction 418 439 - -
Dere13g0289 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0289 Dere-ChrDere13 4089737 4095261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0289 1 517 C2C2-Gata Transcription Factor Family AT4G17570 53.308 5.63e-156 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere13g0289 ASXH 3.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0453 09 7366507 7371980 Dere13g0289 13 4089737 4095261 CCT